miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10881 3' -60.6 NC_002794.1 + 195468 0.69 0.627698
Target:  5'- cCCCGCUUGCCCGgacUCGcCCGCCg- -3'
miRNA:   3'- -GGGCGAGUGGGCacaGGCaGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 194511 0.69 0.646958
Target:  5'- gCCCGCg-GCCCGcGUgCCGcCgGCCCAg -3'
miRNA:   3'- -GGGCGagUGGGCaCA-GGCaGgUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 194402 0.66 0.819545
Target:  5'- gCCCGgUCGuuCGcGUCCG-CCACCg- -3'
miRNA:   3'- -GGGCgAGUggGCaCAGGCaGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 193774 0.67 0.741484
Target:  5'- gCUCGCUCGCCCGc--UCGaUCGCCCGa -3'
miRNA:   3'- -GGGCGAGUGGGCacaGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 193718 0.77 0.262245
Target:  5'- gCCCGCccCGCCgGUGUCCucgCCGCCCGc -3'
miRNA:   3'- -GGGCGa-GUGGgCACAGGca-GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 193421 0.76 0.299444
Target:  5'- gCCGC-CGCCCGUcguccagccGUCCGgcacgCCGCCCAc -3'
miRNA:   3'- gGGCGaGUGGGCA---------CAGGCa----GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 193177 0.66 0.827559
Target:  5'- gCCCGCgccgCGCCagCGUGUCCaGgucgugcgCCACCa- -3'
miRNA:   3'- -GGGCGa---GUGG--GCACAGG-Ca-------GGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 191245 0.73 0.417867
Target:  5'- aCCGUUCGCCCGa-UCCGgacgccCCACCCGc -3'
miRNA:   3'- gGGCGAGUGGGCacAGGCa-----GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 191186 0.76 0.280354
Target:  5'- uCgCGCUCGCCCGg--CCGcCCGCCCGc -3'
miRNA:   3'- -GgGCGAGUGGGCacaGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 189977 0.87 0.053947
Target:  5'- gCCCGCUCGCCCGacgGUCCGUCCggguccaucgGCCCGu -3'
miRNA:   3'- -GGGCGAGUGGGCa--CAGGCAGG----------UGGGU- -5'
10881 3' -60.6 NC_002794.1 + 189925 0.72 0.443045
Target:  5'- gCCCGCUCGCCCGacggCCG-CCgauggACCCGg -3'
miRNA:   3'- -GGGCGAGUGGGCaca-GGCaGG-----UGGGU- -5'
10881 3' -60.6 NC_002794.1 + 189888 0.66 0.777352
Target:  5'- gCCCGCUCggGCCCGccGUCagcgCCGCCg- -3'
miRNA:   3'- -GGGCGAG--UGGGCa-CAGgca-GGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 189566 0.75 0.341316
Target:  5'- uCCCGCUCggucggccgGCCCGggccggcgccccuuaGcCCGUCCGCCCGa -3'
miRNA:   3'- -GGGCGAG---------UGGGCa--------------CaGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 188335 0.67 0.759618
Target:  5'- gCCGC-CGCCgGcGgcgCCGUCgCGCCCGu -3'
miRNA:   3'- gGGCGaGUGGgCaCa--GGCAG-GUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 187908 0.67 0.732286
Target:  5'- gCCGCUCGCCCG---CCGggccCCGCCgCGa -3'
miRNA:   3'- gGGCGAGUGGGCacaGGCa---GGUGG-GU- -5'
10881 3' -60.6 NC_002794.1 + 187085 0.67 0.750597
Target:  5'- gCUGCUCGCCaCGUGgaacagcCCGUCgGuguCCCAg -3'
miRNA:   3'- gGGCGAGUGG-GCACa------GGCAGgU---GGGU- -5'
10881 3' -60.6 NC_002794.1 + 186054 0.67 0.768539
Target:  5'- gUCGUUC-CCCG-GUCCGUggCCACCg- -3'
miRNA:   3'- gGGCGAGuGGGCaCAGGCA--GGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 185948 0.66 0.81138
Target:  5'- gCUCGCggccgCGCCCGUuUCCcuGUCCGuuCCCGg -3'
miRNA:   3'- -GGGCGa----GUGGGCAcAGG--CAGGU--GGGU- -5'
10881 3' -60.6 NC_002794.1 + 185308 0.68 0.694803
Target:  5'- aCCCGgUCGCCCcaGUGUCgCcUCCACaCCc -3'
miRNA:   3'- -GGGCgAGUGGG--CACAG-GcAGGUG-GGu -5'
10881 3' -60.6 NC_002794.1 + 184185 0.67 0.759618
Target:  5'- aCCGCggCGCCCGgcgagGcCCGcucCCGCCCc -3'
miRNA:   3'- gGGCGa-GUGGGCa----CaGGCa--GGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.