miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10881 3' -60.6 NC_002794.1 + 184119 0.7 0.583528
Target:  5'- cCCCGCUCGCcggcgucacguagaCCGUGgcguucggaUCCGccggcgacggcgucUCCACCCGa -3'
miRNA:   3'- -GGGCGAGUG--------------GGCAC---------AGGC--------------AGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 183511 0.67 0.750597
Target:  5'- cCCCGagacccaugUCGCggCCGUGcgcgccCCGUCCGCCCGg -3'
miRNA:   3'- -GGGCg--------AGUG--GGCACa-----GGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 183466 0.7 0.579709
Target:  5'- gCCCGCcCGCCgCGaGUCCG-CgGCCCGa -3'
miRNA:   3'- -GGGCGaGUGG-GCaCAGGCaGgUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 182771 0.68 0.685298
Target:  5'- gCCGCaCGCCCG-GUCCa-CCACCUg -3'
miRNA:   3'- gGGCGaGUGGGCaCAGGcaGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 182056 0.66 0.81138
Target:  5'- uCCUGCgcguagggCGCCUGcGUCCGgucggCCACCg- -3'
miRNA:   3'- -GGGCGa-------GUGGGCaCAGGCa----GGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 181760 0.66 0.81138
Target:  5'- gCCCGCUgACgCCGaUGgcgCCGcgCCGCCg- -3'
miRNA:   3'- -GGGCGAgUG-GGC-ACa--GGCa-GGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 181511 0.75 0.333462
Target:  5'- -aCGCUCGuCCaCGUcGUCCGUUCGCCCGc -3'
miRNA:   3'- ggGCGAGU-GG-GCA-CAGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 154501 0.68 0.685298
Target:  5'- aCCCGCUC-CCCGUGuauauaUCUcUCC-CCCu -3'
miRNA:   3'- -GGGCGAGuGGGCAC------AGGcAGGuGGGu -5'
10881 3' -60.6 NC_002794.1 + 153652 0.67 0.759618
Target:  5'- -gCGCUUACgCCGcGUCCGgCCGCCg- -3'
miRNA:   3'- ggGCGAGUG-GGCaCAGGCaGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 148900 0.66 0.78605
Target:  5'- --gGCUCGUCCGcUGUCUGUUCACCUu -3'
miRNA:   3'- gggCGAGUGGGC-ACAGGCAGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 147073 0.66 0.81138
Target:  5'- gCCGCgggCGCCCG-GUCCaaggacgaaggcGUCggCGCCCGg -3'
miRNA:   3'- gGGCGa--GUGGGCaCAGG------------CAG--GUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 146378 0.71 0.541877
Target:  5'- gUCCGCUCguccagacacGCUCGUccGUCCGaucgUCCGCCCGc -3'
miRNA:   3'- -GGGCGAG----------UGGGCA--CAGGC----AGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 143115 0.67 0.740568
Target:  5'- cCCCGCUCGgCCGUggcgcagGUCuCGggCCACUCc -3'
miRNA:   3'- -GGGCGAGUgGGCA-------CAG-GCa-GGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 137111 0.77 0.234191
Target:  5'- uUCCGCgaccuccCGCCCGaacugucGUCCGUCCGCCCGc -3'
miRNA:   3'- -GGGCGa------GUGGGCa------CAGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 133261 0.66 0.800552
Target:  5'- gCUCGCUCACCgggagacucgcgUGUgcgcgcggcuaucuGUUCGUCCGCUCAc -3'
miRNA:   3'- -GGGCGAGUGG------------GCA--------------CAGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 131504 0.67 0.768539
Target:  5'- gCCCGUcaucacgaccUCGCCCGUGaUCGgcgCCggGCCCGu -3'
miRNA:   3'- -GGGCG----------AGUGGGCACaGGCa--GG--UGGGU- -5'
10881 3' -60.6 NC_002794.1 + 131432 0.68 0.704262
Target:  5'- gCCCGUcaucacgaccUCGCCCGUGUuaggcaccgggcCCGUCaucacgaccuCGCCCGu -3'
miRNA:   3'- -GGGCG----------AGUGGGCACA------------GGCAG----------GUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 131342 0.71 0.541877
Target:  5'- gCCCGUcgugacgguuUCGCCCGUGaucaCCGcUUCGCCCGu -3'
miRNA:   3'- -GGGCG----------AGUGGGCACa---GGC-AGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 131299 0.7 0.560706
Target:  5'- cUCCGC-CGCCCGUGgUCGUCaccuCGCCCu -3'
miRNA:   3'- -GGGCGaGUGGGCACaGGCAG----GUGGGu -5'
10881 3' -60.6 NC_002794.1 + 124312 0.67 0.723012
Target:  5'- -aCGCUCGCCCG-GUCgaUCgACCCGc -3'
miRNA:   3'- ggGCGAGUGGGCaCAGgcAGgUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.