Results 41 - 60 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10881 | 3' | -60.6 | NC_002794.1 | + | 46255 | 0.66 | 0.819545 |
Target: 5'- gUCCGCUUcCUCGgg-CCGUCgACCCc -3' miRNA: 3'- -GGGCGAGuGGGCacaGGCAGgUGGGu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 92046 | 0.66 | 0.819545 |
Target: 5'- gCCGUgaACCUGUGUCCGgcgugCCGCggCCGg -3' miRNA: 3'- gGGCGagUGGGCACAGGCa----GGUG--GGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 29190 | 0.66 | 0.827559 |
Target: 5'- uUCGgUCACCa--GUCCGUCCGUCCGg -3' miRNA: 3'- gGGCgAGUGGgcaCAGGCAGGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 13135 | 0.66 | 0.827559 |
Target: 5'- gCUCGCUCGCgCGggucgucgCCGUCCcaugccgcacACCCAc -3' miRNA: 3'- -GGGCGAGUGgGCaca-----GGCAGG----------UGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 194402 | 0.66 | 0.819545 |
Target: 5'- gCCCGgUCGuuCGcGUCCG-CCACCg- -3' miRNA: 3'- -GGGCgAGUggGCaCAGGCaGGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 73789 | 0.66 | 0.794626 |
Target: 5'- uCCUGCUgUACCCGUccCCGaCCACCg- -3' miRNA: 3'- -GGGCGA-GUGGGCAcaGGCaGGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 189888 | 0.66 | 0.777352 |
Target: 5'- gCCCGCUCggGCCCGccGUCagcgCCGCCg- -3' miRNA: 3'- -GGGCGAG--UGGGCa-CAGgca-GGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 26599 | 0.67 | 0.759618 |
Target: 5'- uCCCGCUCGcgccccgccCCCGcGUCCcccaccguccgcGUCCGCgCAc -3' miRNA: 3'- -GGGCGAGU---------GGGCaCAGG------------CAGGUGgGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 188335 | 0.67 | 0.759618 |
Target: 5'- gCCGC-CGCCgGcGgcgCCGUCgCGCCCGu -3' miRNA: 3'- gGGCGaGUGGgCaCa--GGCAG-GUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 19362 | 0.67 | 0.766763 |
Target: 5'- gCCCGCccCGCCCGgaucgGgcgggCCGgucaccccucagCCACCCAc -3' miRNA: 3'- -GGGCGa-GUGGGCa----Ca----GGCa-----------GGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 184185 | 0.67 | 0.759618 |
Target: 5'- aCCGCggCGCCCGgcgagGcCCGcucCCGCCCc -3' miRNA: 3'- gGGCGa-GUGGGCa----CaGGCa--GGUGGGu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 131504 | 0.67 | 0.768539 |
Target: 5'- gCCCGUcaucacgaccUCGCCCGUGaUCGgcgCCggGCCCGu -3' miRNA: 3'- -GGGCG----------AGUGGGCACaGGCa--GG--UGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 115344 | 0.66 | 0.77472 |
Target: 5'- gCCGCUCGgCac-GUCCaggcgacagagcgcGUCCACCCAu -3' miRNA: 3'- gGGCGAGUgGgcaCAGG--------------CAGGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 24021 | 0.67 | 0.768539 |
Target: 5'- aCCGCggCGCCuCGgcgacggcgGUcccuccCCGUCCGCCCGc -3' miRNA: 3'- gGGCGa-GUGG-GCa--------CA------GGCAGGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 186054 | 0.67 | 0.768539 |
Target: 5'- gUCGUUC-CCCG-GUCCGUggCCACCg- -3' miRNA: 3'- gGGCGAGuGGGCaCAGGCA--GGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 86702 | 0.66 | 0.776476 |
Target: 5'- gCCCGgUCGCUCGUcgaagccGcCCGgCCACCUAg -3' miRNA: 3'- -GGGCgAGUGGGCA-------CaGGCaGGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 74009 | 0.66 | 0.777352 |
Target: 5'- cCCaCGCUgCGCCUGUucggCCG-CCACCCc -3' miRNA: 3'- -GG-GCGA-GUGGGCAca--GGCaGGUGGGu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 67140 | 0.66 | 0.777352 |
Target: 5'- -gCGCUCGCggauauacgCCGUGUCCGUgCuguuggccaagaGCCCGa -3' miRNA: 3'- ggGCGAGUG---------GGCACAGGCAgG------------UGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 28674 | 0.66 | 0.78605 |
Target: 5'- aCCGC-CGCCgGUGgCCGUcgCCGCCg- -3' miRNA: 3'- gGGCGaGUGGgCACaGGCA--GGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 148900 | 0.66 | 0.78605 |
Target: 5'- --gGCUCGUCCGcUGUCUGUUCACCUu -3' miRNA: 3'- gggCGAGUGGGC-ACAGGCAGGUGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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