miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10881 3' -60.6 NC_002794.1 + 74009 0.66 0.777352
Target:  5'- cCCaCGCUgCGCCUGUucggCCG-CCACCCc -3'
miRNA:   3'- -GG-GCGA-GUGGGCAca--GGCaGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 86702 0.66 0.776476
Target:  5'- gCCCGgUCGCUCGUcgaagccGcCCGgCCACCUAg -3'
miRNA:   3'- -GGGCgAGUGGGCA-------CaGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 183511 0.67 0.750597
Target:  5'- cCCCGagacccaugUCGCggCCGUGcgcgccCCGUCCGCCCGg -3'
miRNA:   3'- -GGGCg--------AGUG--GGCACa-----GGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 187085 0.67 0.750597
Target:  5'- gCUGCUCGCCaCGUGgaacagcCCGUCgGuguCCCAg -3'
miRNA:   3'- gGGCGAGUGG-GCACa------GGCAGgU---GGGU- -5'
10881 3' -60.6 NC_002794.1 + 31399 0.67 0.750597
Target:  5'- cCCCGCcgCGCCCGccgcGcCCG-CCGCCUu -3'
miRNA:   3'- -GGGCGa-GUGGGCa---CaGGCaGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 72811 0.67 0.748782
Target:  5'- gCCCGCUCcgucGCCCG--UCCGacggacggcagaCCACCCGa -3'
miRNA:   3'- -GGGCGAG----UGGGCacAGGCa-----------GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 46198 0.67 0.741484
Target:  5'- aCCgCGCUCGCUCGccgCCGuUCCGgCCAg -3'
miRNA:   3'- -GG-GCGAGUGGGCacaGGC-AGGUgGGU- -5'
10881 3' -60.6 NC_002794.1 + 115606 0.67 0.741484
Target:  5'- aCCCGCUCGCCCGgcgCCGggaggCgGgUCAg -3'
miRNA:   3'- -GGGCGAGUGGGCacaGGCa----GgUgGGU- -5'
10881 3' -60.6 NC_002794.1 + 122143 0.67 0.741484
Target:  5'- aCCGuUUCACgccggCCGUGUCCGaCUACCUg -3'
miRNA:   3'- gGGC-GAGUG-----GGCACAGGCaGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 109873 0.67 0.741484
Target:  5'- gCUCGCUCGCCCGUGcucgugaaggcUCgcagaugcuCGUUCGCUCGa -3'
miRNA:   3'- -GGGCGAGUGGGCAC-----------AG---------GCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 153652 0.67 0.759618
Target:  5'- -gCGCUUACgCCGcGUCCGgCCGCCg- -3'
miRNA:   3'- ggGCGAGUG-GGCaCAGGCaGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 81641 0.67 0.759618
Target:  5'- uCCUGCgCA-CCGUcGUCUGgCCGCCCAu -3'
miRNA:   3'- -GGGCGaGUgGGCA-CAGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 186054 0.67 0.768539
Target:  5'- gUCGUUC-CCCG-GUCCGUggCCACCg- -3'
miRNA:   3'- gGGCGAGuGGGCaCAGGCA--GGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 24021 0.67 0.768539
Target:  5'- aCCGCggCGCCuCGgcgacggcgGUcccuccCCGUCCGCCCGc -3'
miRNA:   3'- gGGCGa-GUGG-GCa--------CA------GGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 115344 0.66 0.77472
Target:  5'- gCCGCUCGgCac-GUCCaggcgacagagcgcGUCCACCCAu -3'
miRNA:   3'- gGGCGAGUgGgcaCAGG--------------CAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 131504 0.67 0.768539
Target:  5'- gCCCGUcaucacgaccUCGCCCGUGaUCGgcgCCggGCCCGu -3'
miRNA:   3'- -GGGCG----------AGUGGGCACaGGCa--GG--UGGGU- -5'
10881 3' -60.6 NC_002794.1 + 184185 0.67 0.759618
Target:  5'- aCCGCggCGCCCGgcgagGcCCGcucCCGCCCc -3'
miRNA:   3'- gGGCGa-GUGGGCa----CaGGCa--GGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 19362 0.67 0.766763
Target:  5'- gCCCGCccCGCCCGgaucgGgcgggCCGgucaccccucagCCACCCAc -3'
miRNA:   3'- -GGGCGa-GUGGGCa----Ca----GGCa-----------GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 188335 0.67 0.759618
Target:  5'- gCCGC-CGCCgGcGgcgCCGUCgCGCCCGu -3'
miRNA:   3'- gGGCGaGUGGgCaCa--GGCAG-GUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 26599 0.67 0.759618
Target:  5'- uCCCGCUCGcgccccgccCCCGcGUCCcccaccguccgcGUCCGCgCAc -3'
miRNA:   3'- -GGGCGAGU---------GGGCaCAGG------------CAGGUGgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.