Results 81 - 100 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10881 | 3' | -60.6 | NC_002794.1 | + | 187908 | 0.67 | 0.732286 |
Target: 5'- gCCGCUCGCCCG---CCGggccCCGCCgCGa -3' miRNA: 3'- gGGCGAGUGGGCacaGGCa---GGUGG-GU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 143115 | 0.67 | 0.740568 |
Target: 5'- cCCCGCUCGgCCGUggcgcagGUCuCGggCCACUCc -3' miRNA: 3'- -GGGCGAGUgGGCA-------CAG-GCa-GGUGGGu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 17956 | 0.67 | 0.723012 |
Target: 5'- aCCCGCgacUCGCCCGgg-CCGUgagCCuggcGCCCAc -3' miRNA: 3'- -GGGCG---AGUGGGCacaGGCA---GG----UGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 39153 | 0.67 | 0.732286 |
Target: 5'- -aCGCUCACCC-UGUCUuUCCGacuCCCGa -3' miRNA: 3'- ggGCGAGUGGGcACAGGcAGGU---GGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 124312 | 0.67 | 0.723012 |
Target: 5'- -aCGCUCGCCCG-GUCgaUCgACCCGc -3' miRNA: 3'- ggGCGAGUGGGCaCAGgcAGgUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 76592 | 0.68 | 0.713668 |
Target: 5'- aCCCGCUCuucgACCCGccggGUCguCGUCaguaGCCCu -3' miRNA: 3'- -GGGCGAG----UGGGCa---CAG--GCAGg---UGGGu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 79871 | 0.68 | 0.713668 |
Target: 5'- uCCCGCUgGCCCGacagcacGUaCGUCCACUa- -3' miRNA: 3'- -GGGCGAgUGGGCa------CAgGCAGGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 109873 | 0.67 | 0.741484 |
Target: 5'- gCUCGCUCGCCCGUGcucgugaaggcUCgcagaugcuCGUUCGCUCGa -3' miRNA: 3'- -GGGCGAGUGGGCAC-----------AG---------GCAGGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 122143 | 0.67 | 0.741484 |
Target: 5'- aCCGuUUCACgccggCCGUGUCCGaCUACCUg -3' miRNA: 3'- gGGC-GAGUG-----GGCACAGGCaGGUGGGu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 115606 | 0.67 | 0.741484 |
Target: 5'- aCCCGCUCGCCCGgcgCCGggaggCgGgUCAg -3' miRNA: 3'- -GGGCGAGUGGGCacaGGCa----GgUgGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 19362 | 0.67 | 0.766763 |
Target: 5'- gCCCGCccCGCCCGgaucgGgcgggCCGgucaccccucagCCACCCAc -3' miRNA: 3'- -GGGCGa-GUGGGCa----Ca----GGCa-----------GGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 188335 | 0.67 | 0.759618 |
Target: 5'- gCCGC-CGCCgGcGgcgCCGUCgCGCCCGu -3' miRNA: 3'- gGGCGaGUGGgCaCa--GGCAG-GUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 26599 | 0.67 | 0.759618 |
Target: 5'- uCCCGCUCGcgccccgccCCCGcGUCCcccaccguccgcGUCCGCgCAc -3' miRNA: 3'- -GGGCGAGU---------GGGCaCAGG------------CAGGUGgGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 81641 | 0.67 | 0.759618 |
Target: 5'- uCCUGCgCA-CCGUcGUCUGgCCGCCCAu -3' miRNA: 3'- -GGGCGaGUgGGCA-CAGGCaGGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 153652 | 0.67 | 0.759618 |
Target: 5'- -gCGCUUACgCCGcGUCCGgCCGCCg- -3' miRNA: 3'- ggGCGAGUG-GGCaCAGGCaGGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 183511 | 0.67 | 0.750597 |
Target: 5'- cCCCGagacccaugUCGCggCCGUGcgcgccCCGUCCGCCCGg -3' miRNA: 3'- -GGGCg--------AGUG--GGCACa-----GGCAGGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 187085 | 0.67 | 0.750597 |
Target: 5'- gCUGCUCGCCaCGUGgaacagcCCGUCgGuguCCCAg -3' miRNA: 3'- gGGCGAGUGG-GCACa------GGCAGgU---GGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 31399 | 0.67 | 0.750597 |
Target: 5'- cCCCGCcgCGCCCGccgcGcCCG-CCGCCUu -3' miRNA: 3'- -GGGCGa-GUGGGCa---CaGGCaGGUGGGu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 72811 | 0.67 | 0.748782 |
Target: 5'- gCCCGCUCcgucGCCCG--UCCGacggacggcagaCCACCCGa -3' miRNA: 3'- -GGGCGAG----UGGGCacAGGCa-----------GGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 46198 | 0.67 | 0.741484 |
Target: 5'- aCCgCGCUCGCUCGccgCCGuUCCGgCCAg -3' miRNA: 3'- -GG-GCGAGUGGGCacaGGC-AGGUgGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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