miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10881 5' -52.6 NC_002794.1 + 109934 0.66 0.993649
Target:  5'- uCCCAGuucUGGGggucaGGGAGGGCCGGg -3'
miRNA:   3'- -GGGUCc--AUCCaugagCCUUUCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 137025 0.66 0.99271
Target:  5'- aUCAGGUucAGGUGCUCGuc--GAUCGGg -3'
miRNA:   3'- gGGUCCA--UCCAUGAGCcuuuCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 50593 0.66 0.991663
Target:  5'- gCUGGGUGGccgGCgcCGGggGGAUCGAg -3'
miRNA:   3'- gGGUCCAUCca-UGa-GCCuuUCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 48709 0.66 0.991663
Target:  5'- gCCCAGuacucGGUGCgCGGAuccGACCGGc -3'
miRNA:   3'- -GGGUCcau--CCAUGaGCCUuu-CUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 140681 0.67 0.987796
Target:  5'- gCgCAGGUcGGUGCgaCGGAccGGCCGc -3'
miRNA:   3'- -GgGUCCAuCCAUGa-GCCUuuCUGGCu -5'
10881 5' -52.6 NC_002794.1 + 85866 0.67 0.986238
Target:  5'- aCCCGGaaAGcGUGCUUGGugcAGACUGAa -3'
miRNA:   3'- -GGGUCcaUC-CAUGAGCCuu-UCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 160939 0.67 0.985233
Target:  5'- gCCCAGGUGgacugguauaugacGGUcuuuggaauaggugACUCGGuucuGGCCGGc -3'
miRNA:   3'- -GGGUCCAU--------------CCA--------------UGAGCCuuu-CUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 94823 0.67 0.984532
Target:  5'- aCC-GGcGGGUGCUgCGGcuGGACCGc -3'
miRNA:   3'- gGGuCCaUCCAUGA-GCCuuUCUGGCu -5'
10881 5' -52.6 NC_002794.1 + 13096 0.67 0.98267
Target:  5'- uCCCGGGggacgAGGUGCguucggCGGGGucGCCGc -3'
miRNA:   3'- -GGGUCCa----UCCAUGa-----GCCUUucUGGCu -5'
10881 5' -52.6 NC_002794.1 + 178793 0.67 0.98267
Target:  5'- -gCGGGaAGGcgGCUCGGcccggGGGGACCGGg -3'
miRNA:   3'- ggGUCCaUCCa-UGAGCC-----UUUCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 80414 0.67 0.980644
Target:  5'- gCCCAGGU-GGcGC-CGGGcGGGGCCGc -3'
miRNA:   3'- -GGGUCCAuCCaUGaGCCU-UUCUGGCu -5'
10881 5' -52.6 NC_002794.1 + 146870 0.68 0.978446
Target:  5'- uUCGGGUGGGggGCgCGGuc-GGCCGAu -3'
miRNA:   3'- gGGUCCAUCCa-UGaGCCuuuCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 105190 0.68 0.976068
Target:  5'- aCCAGGUgcAGGaACUCGGAcgcggugaucAGGGUCGAc -3'
miRNA:   3'- gGGUCCA--UCCaUGAGCCU----------UUCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 158744 0.68 0.973237
Target:  5'- gCCCGGGUAGuGUGCgcgcacguggugaUCGGuu-GACCu- -3'
miRNA:   3'- -GGGUCCAUC-CAUG-------------AGCCuuuCUGGcu -5'
10881 5' -52.6 NC_002794.1 + 52953 0.69 0.962627
Target:  5'- gCCCagcAGGUccucggccAGGUGCUCGGccucguccuccuGACCGAg -3'
miRNA:   3'- -GGG---UCCA--------UCCAUGAGCCuuu---------CUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 150445 0.69 0.961252
Target:  5'- gUCCGGGcGGGUGCggauccCGGAAGGcucCCGGu -3'
miRNA:   3'- -GGGUCCaUCCAUGa-----GCCUUUCu--GGCU- -5'
10881 5' -52.6 NC_002794.1 + 139543 0.69 0.945544
Target:  5'- aUCAGGUAGGUGCggUGGu-AGAuCCGGc -3'
miRNA:   3'- gGGUCCAUCCAUGa-GCCuuUCU-GGCU- -5'
10881 5' -52.6 NC_002794.1 + 5217 0.69 0.945544
Target:  5'- aUCCAGGUaucAGGUuaggcaucggagACUCGGAcguccagcuGACCGGg -3'
miRNA:   3'- -GGGUCCA---UCCA------------UGAGCCUuu-------CUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 136552 0.7 0.931349
Target:  5'- aCCGGGUacucgucucgcAGGUGCUCGGGcgucucGAuCCGAc -3'
miRNA:   3'- gGGUCCA-----------UCCAUGAGCCUuu----CU-GGCU- -5'
10881 5' -52.6 NC_002794.1 + 92332 0.7 0.930839
Target:  5'- gCCCGGGcGGGcgGCUCGGcgucaacGucGACCGGc -3'
miRNA:   3'- -GGGUCCaUCCa-UGAGCC-------UuuCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.