miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10881 5' -52.6 NC_002794.1 + 148987 0.7 0.926147
Target:  5'- aCCuc-UGGGUGCUCGGucGGAUCGAc -3'
miRNA:   3'- gGGuccAUCCAUGAGCCuuUCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 149315 0.7 0.926147
Target:  5'- -gUAGGUAGGgcaAgUCGGAccGGACCGAa -3'
miRNA:   3'- ggGUCCAUCCa--UgAGCCUu-UCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 128397 0.7 0.926147
Target:  5'- uCCCGGaUGGGcgaggggAC-CGGGGAGACCGGg -3'
miRNA:   3'- -GGGUCcAUCCa------UGaGCCUUUCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 151670 0.71 0.909127
Target:  5'- gCCGGGUgacgaccgaGGGUACUUGGGucgccccgccGGCCGAg -3'
miRNA:   3'- gGGUCCA---------UCCAUGAGCCUuu--------CUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 159357 0.72 0.876148
Target:  5'- gCCAGGUAGGUGaaucgucugUGGAGAGA-CGAa -3'
miRNA:   3'- gGGUCCAUCCAUga-------GCCUUUCUgGCU- -5'
10881 5' -52.6 NC_002794.1 + 112910 0.72 0.868889
Target:  5'- gUCCAGGUccAGGUGCUCGGGcuucUCGAg -3'
miRNA:   3'- -GGGUCCA--UCCAUGAGCCUuucuGGCU- -5'
10881 5' -52.6 NC_002794.1 + 105792 0.73 0.821143
Target:  5'- -aUAGGUcGGU-CUCGGAGacGGACCGAa -3'
miRNA:   3'- ggGUCCAuCCAuGAGCCUU--UCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 35284 0.73 0.81081
Target:  5'- aCCGGGUGGGcgucgugcgccCUCGGAcGGACCGc -3'
miRNA:   3'- gGGUCCAUCCau---------GAGCCUuUCUGGCu -5'
10881 5' -52.6 NC_002794.1 + 142685 0.73 0.803793
Target:  5'- -aCAGGU-GGUugUCGGGGAGGgCGGa -3'
miRNA:   3'- ggGUCCAuCCAugAGCCUUUCUgGCU- -5'
10881 5' -52.6 NC_002794.1 + 37361 0.74 0.776638
Target:  5'- cCCCAGGUAGucgaaGCUCGGGcgcAGGCCGu -3'
miRNA:   3'- -GGGUCCAUCca---UGAGCCUu--UCUGGCu -5'
10881 5' -52.6 NC_002794.1 + 9739 0.76 0.658959
Target:  5'- aCCGGGUGGGUAggUGGGGggggggucAGACCGAc -3'
miRNA:   3'- gGGUCCAUCCAUgaGCCUU--------UCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 24250 1.12 0.006268
Target:  5'- aCCCAGGUAGGUACUCGGAAAGACCGAu -3'
miRNA:   3'- -GGGUCCAUCCAUGAGCCUUUCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.