Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10881 | 5' | -52.6 | NC_002794.1 | + | 24250 | 1.12 | 0.006268 |
Target: 5'- aCCCAGGUAGGUACUCGGAAAGACCGAu -3' miRNA: 3'- -GGGUCCAUCCAUGAGCCUUUCUGGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 9739 | 0.76 | 0.658959 |
Target: 5'- aCCGGGUGGGUAggUGGGGggggggucAGACCGAc -3' miRNA: 3'- gGGUCCAUCCAUgaGCCUU--------UCUGGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 37361 | 0.74 | 0.776638 |
Target: 5'- cCCCAGGUAGucgaaGCUCGGGcgcAGGCCGu -3' miRNA: 3'- -GGGUCCAUCca---UGAGCCUu--UCUGGCu -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 35284 | 0.73 | 0.81081 |
Target: 5'- aCCGGGUGGGcgucgugcgccCUCGGAcGGACCGc -3' miRNA: 3'- gGGUCCAUCCau---------GAGCCUuUCUGGCu -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 105792 | 0.73 | 0.821143 |
Target: 5'- -aUAGGUcGGU-CUCGGAGacGGACCGAa -3' miRNA: 3'- ggGUCCAuCCAuGAGCCUU--UCUGGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 142685 | 0.73 | 0.803793 |
Target: 5'- -aCAGGU-GGUugUCGGGGAGGgCGGa -3' miRNA: 3'- ggGUCCAuCCAugAGCCUUUCUgGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 159357 | 0.72 | 0.876148 |
Target: 5'- gCCAGGUAGGUGaaucgucugUGGAGAGA-CGAa -3' miRNA: 3'- gGGUCCAUCCAUga-------GCCUUUCUgGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 112910 | 0.72 | 0.868889 |
Target: 5'- gUCCAGGUccAGGUGCUCGGGcuucUCGAg -3' miRNA: 3'- -GGGUCCA--UCCAUGAGCCUuucuGGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 151670 | 0.71 | 0.909127 |
Target: 5'- gCCGGGUgacgaccgaGGGUACUUGGGucgccccgccGGCCGAg -3' miRNA: 3'- gGGUCCA---------UCCAUGAGCCUuu--------CUGGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 136552 | 0.7 | 0.931349 |
Target: 5'- aCCGGGUacucgucucgcAGGUGCUCGGGcgucucGAuCCGAc -3' miRNA: 3'- gGGUCCA-----------UCCAUGAGCCUuu----CU-GGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 92332 | 0.7 | 0.930839 |
Target: 5'- gCCCGGGcGGGcgGCUCGGcgucaacGucGACCGGc -3' miRNA: 3'- -GGGUCCaUCCa-UGAGCC-------UuuCUGGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 149315 | 0.7 | 0.926147 |
Target: 5'- -gUAGGUAGGgcaAgUCGGAccGGACCGAa -3' miRNA: 3'- ggGUCCAUCCa--UgAGCCUu-UCUGGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 128397 | 0.7 | 0.926147 |
Target: 5'- uCCCGGaUGGGcgaggggAC-CGGGGAGACCGGg -3' miRNA: 3'- -GGGUCcAUCCa------UGaGCCUUUCUGGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 148987 | 0.7 | 0.926147 |
Target: 5'- aCCuc-UGGGUGCUCGGucGGAUCGAc -3' miRNA: 3'- gGGuccAUCCAUGAGCCuuUCUGGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 52953 | 0.69 | 0.962627 |
Target: 5'- gCCCagcAGGUccucggccAGGUGCUCGGccucguccuccuGACCGAg -3' miRNA: 3'- -GGG---UCCA--------UCCAUGAGCCuuu---------CUGGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 150445 | 0.69 | 0.961252 |
Target: 5'- gUCCGGGcGGGUGCggauccCGGAAGGcucCCGGu -3' miRNA: 3'- -GGGUCCaUCCAUGa-----GCCUUUCu--GGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 5217 | 0.69 | 0.945544 |
Target: 5'- aUCCAGGUaucAGGUuaggcaucggagACUCGGAcguccagcuGACCGGg -3' miRNA: 3'- -GGGUCCA---UCCA------------UGAGCCUuu-------CUGGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 139543 | 0.69 | 0.945544 |
Target: 5'- aUCAGGUAGGUGCggUGGu-AGAuCCGGc -3' miRNA: 3'- gGGUCCAUCCAUGa-GCCuuUCU-GGCU- -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 158744 | 0.68 | 0.973237 |
Target: 5'- gCCCGGGUAGuGUGCgcgcacguggugaUCGGuu-GACCu- -3' miRNA: 3'- -GGGUCCAUC-CAUG-------------AGCCuuuCUGGcu -5' |
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10881 | 5' | -52.6 | NC_002794.1 | + | 105190 | 0.68 | 0.976068 |
Target: 5'- aCCAGGUgcAGGaACUCGGAcgcggugaucAGGGUCGAc -3' miRNA: 3'- gGGUCCA--UCCaUGAGCCU----------UUCUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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