miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10881 5' -52.6 NC_002794.1 + 139543 0.69 0.945544
Target:  5'- aUCAGGUAGGUGCggUGGu-AGAuCCGGc -3'
miRNA:   3'- gGGUCCAUCCAUGa-GCCuuUCU-GGCU- -5'
10881 5' -52.6 NC_002794.1 + 140681 0.67 0.987796
Target:  5'- gCgCAGGUcGGUGCgaCGGAccGGCCGc -3'
miRNA:   3'- -GgGUCCAuCCAUGa-GCCUuuCUGGCu -5'
10881 5' -52.6 NC_002794.1 + 142685 0.73 0.803793
Target:  5'- -aCAGGU-GGUugUCGGGGAGGgCGGa -3'
miRNA:   3'- ggGUCCAuCCAugAGCCUUUCUgGCU- -5'
10881 5' -52.6 NC_002794.1 + 146870 0.68 0.978446
Target:  5'- uUCGGGUGGGggGCgCGGuc-GGCCGAu -3'
miRNA:   3'- gGGUCCAUCCa-UGaGCCuuuCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 148987 0.7 0.926147
Target:  5'- aCCuc-UGGGUGCUCGGucGGAUCGAc -3'
miRNA:   3'- gGGuccAUCCAUGAGCCuuUCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 149315 0.7 0.926147
Target:  5'- -gUAGGUAGGgcaAgUCGGAccGGACCGAa -3'
miRNA:   3'- ggGUCCAUCCa--UgAGCCUu-UCUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 150445 0.69 0.961252
Target:  5'- gUCCGGGcGGGUGCggauccCGGAAGGcucCCGGu -3'
miRNA:   3'- -GGGUCCaUCCAUGa-----GCCUUUCu--GGCU- -5'
10881 5' -52.6 NC_002794.1 + 151670 0.71 0.909127
Target:  5'- gCCGGGUgacgaccgaGGGUACUUGGGucgccccgccGGCCGAg -3'
miRNA:   3'- gGGUCCA---------UCCAUGAGCCUuu--------CUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 158744 0.68 0.973237
Target:  5'- gCCCGGGUAGuGUGCgcgcacguggugaUCGGuu-GACCu- -3'
miRNA:   3'- -GGGUCCAUC-CAUG-------------AGCCuuuCUGGcu -5'
10881 5' -52.6 NC_002794.1 + 159357 0.72 0.876148
Target:  5'- gCCAGGUAGGUGaaucgucugUGGAGAGA-CGAa -3'
miRNA:   3'- gGGUCCAUCCAUga-------GCCUUUCUgGCU- -5'
10881 5' -52.6 NC_002794.1 + 160939 0.67 0.985233
Target:  5'- gCCCAGGUGgacugguauaugacGGUcuuuggaauaggugACUCGGuucuGGCCGGc -3'
miRNA:   3'- -GGGUCCAU--------------CCA--------------UGAGCCuuu-CUGGCU- -5'
10881 5' -52.6 NC_002794.1 + 178793 0.67 0.98267
Target:  5'- -gCGGGaAGGcgGCUCGGcccggGGGGACCGGg -3'
miRNA:   3'- ggGUCCaUCCa-UGAGCC-----UUUCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.