miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 192477 0.66 0.926047
Target:  5'- cGCCGAgcccUCGUCCGcCUcgucCCACGgCCG-Cg -3'
miRNA:   3'- -UGGCU----AGCAGGCuGA----GGUGUgGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 188295 0.66 0.926047
Target:  5'- cGCCGcgCGcCgGAC-CCG-GCCCGUCg -3'
miRNA:   3'- -UGGCuaGCaGgCUGaGGUgUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 29860 0.66 0.926047
Target:  5'- gAUCGAggaaUCGUCCcGCUCC-CACCCc-- -3'
miRNA:   3'- -UGGCU----AGCAGGcUGAGGuGUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 90576 0.66 0.926047
Target:  5'- gGCgGGUC--CCGggcGCUCCAguCCCGUCg -3'
miRNA:   3'- -UGgCUAGcaGGC---UGAGGUguGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 75263 0.66 0.920767
Target:  5'- aACCGAc---CCGGCUCCACcgcccACCCGg- -3'
miRNA:   3'- -UGGCUagcaGGCUGAGGUG-----UGGGCag -5'
10882 3' -57.4 NC_002794.1 + 92045 0.66 0.920767
Target:  5'- cGCCGugaaccugUGUCCGGCgugCCGCGgCCGg- -3'
miRNA:   3'- -UGGCua------GCAGGCUGa--GGUGUgGGCag -5'
10882 3' -57.4 NC_002794.1 + 58015 0.66 0.920767
Target:  5'- cGCCGGggcCGccgCCGGCgaacccgCCGCgccGCCCGUCc -3'
miRNA:   3'- -UGGCUa--GCa--GGCUGa------GGUG---UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 123263 0.66 0.920767
Target:  5'- cGCCGGcUgGUCCGGg-CCGCGgUCGUCg -3'
miRNA:   3'- -UGGCU-AgCAGGCUgaGGUGUgGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 107269 0.66 0.915264
Target:  5'- aGCCGcgcCGUCCGcCgccgUCGC-CCCGUCg -3'
miRNA:   3'- -UGGCua-GCAGGCuGa---GGUGuGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 124319 0.66 0.915264
Target:  5'- cCCGGUCGaUCGAC-CCGCgACCCacGUCc -3'
miRNA:   3'- uGGCUAGCaGGCUGaGGUG-UGGG--CAG- -5'
10882 3' -57.4 NC_002794.1 + 73658 0.66 0.915264
Target:  5'- gGCCGAcacgaacacCGUCCuGgUCCACuACCCGUUc -3'
miRNA:   3'- -UGGCUa--------GCAGGcUgAGGUG-UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 43783 0.66 0.914702
Target:  5'- cGCCGAacgccccgCGUCCGacccgccGCUCCGgGCCCa-- -3'
miRNA:   3'- -UGGCUa-------GCAGGC-------UGAGGUgUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 118280 0.66 0.909541
Target:  5'- cGCCGG-CGUCgGGgaCCGCGCCgggcgCGUCg -3'
miRNA:   3'- -UGGCUaGCAGgCUgaGGUGUGG-----GCAG- -5'
10882 3' -57.4 NC_002794.1 + 83872 0.66 0.909541
Target:  5'- cCCGGUCGgcgcgacggCCccgGGCUCgGCGCCCGa- -3'
miRNA:   3'- uGGCUAGCa--------GG---CUGAGgUGUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 19244 0.66 0.909541
Target:  5'- aGCCGAUgaUGUgCCGACcggCCGCGgccCCCGUg -3'
miRNA:   3'- -UGGCUA--GCA-GGCUGa--GGUGU---GGGCAg -5'
10882 3' -57.4 NC_002794.1 + 53736 0.66 0.909541
Target:  5'- cGCC-AUCG-CCGGCcgCCGCugCCGcCg -3'
miRNA:   3'- -UGGcUAGCaGGCUGa-GGUGugGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 44683 0.66 0.909541
Target:  5'- cGCC-AUCGUCCaGAC-CCACcgccGCCCGg- -3'
miRNA:   3'- -UGGcUAGCAGG-CUGaGGUG----UGGGCag -5'
10882 3' -57.4 NC_002794.1 + 131152 0.66 0.903598
Target:  5'- uCCGGUCGcacgCCaGCaCgGCGCCCGUCu -3'
miRNA:   3'- uGGCUAGCa---GGcUGaGgUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 146021 0.66 0.903598
Target:  5'- cGCCGucccaGUCCGcucgauCUCCGgGaCCCGUCg -3'
miRNA:   3'- -UGGCuag--CAGGCu-----GAGGUgU-GGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 23590 0.66 0.903598
Target:  5'- cGCCGAUCcaCCGA-UCCGCcgACCCGa- -3'
miRNA:   3'- -UGGCUAGcaGGCUgAGGUG--UGGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.