miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 151917 0.67 0.863482
Target:  5'- gGCCGAgcucCGUCUGcggcgcaagcGCUCCGcCGCCCG-Cg -3'
miRNA:   3'- -UGGCUa---GCAGGC----------UGAGGU-GUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 67841 0.67 0.87068
Target:  5'- cGCCG-UCGcCCGGCgCCGcCGCgCGUCa -3'
miRNA:   3'- -UGGCuAGCaGGCUGaGGU-GUGgGCAG- -5'
10882 3' -57.4 NC_002794.1 + 193698 0.67 0.891061
Target:  5'- uCCGA--GUCCGAUUCCcccuCGCCCGcCc -3'
miRNA:   3'- uGGCUagCAGGCUGAGGu---GUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 55009 0.67 0.891061
Target:  5'- cGCCGggCGUCCGcCgCCGCGCCg--- -3'
miRNA:   3'- -UGGCuaGCAGGCuGaGGUGUGGgcag -5'
10882 3' -57.4 NC_002794.1 + 18969 0.67 0.891061
Target:  5'- cACCucAUCGaCCGGCUCaacgugaGCGCCUGUCc -3'
miRNA:   3'- -UGGc-UAGCaGGCUGAGg------UGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 44017 0.67 0.889761
Target:  5'- gGCCGG-CGUCCGcagaccgucgcuCUCCGCcCCCGg- -3'
miRNA:   3'- -UGGCUaGCAGGCu-----------GAGGUGuGGGCag -5'
10882 3' -57.4 NC_002794.1 + 59127 0.67 0.884474
Target:  5'- cACCGAgg--CCGACUUCGCgcaggGCCgCGUCg -3'
miRNA:   3'- -UGGCUagcaGGCUGAGGUG-----UGG-GCAG- -5'
10882 3' -57.4 NC_002794.1 + 128849 0.67 0.877679
Target:  5'- cGCCGG-CGUCgaCGACgCCGCugCCGcCg -3'
miRNA:   3'- -UGGCUaGCAG--GCUGaGGUGugGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 80890 0.67 0.881781
Target:  5'- cCCGAUCccCCGGCggcccucgacgacCCGCGCCCGcUCg -3'
miRNA:   3'- uGGCUAGcaGGCUGa------------GGUGUGGGC-AG- -5'
10882 3' -57.4 NC_002794.1 + 29202 0.67 0.884474
Target:  5'- uCCGucCGUCCGGCggUCgGCGgCCGUCg -3'
miRNA:   3'- uGGCuaGCAGGCUG--AGgUGUgGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 31385 0.67 0.884474
Target:  5'- cCCG-UCGUCggCGGCcccgCCGCGCCCGcCg -3'
miRNA:   3'- uGGCuAGCAG--GCUGa---GGUGUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 52799 0.67 0.877679
Target:  5'- aGCCGcUCGUCgGACgCCGgcaGCUCGUCc -3'
miRNA:   3'- -UGGCuAGCAGgCUGaGGUg--UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 144033 0.67 0.877679
Target:  5'- aGCCGuAUC-UCCGGCgCCugGCcgCCGUCg -3'
miRNA:   3'- -UGGC-UAGcAGGCUGaGGugUG--GGCAG- -5'
10882 3' -57.4 NC_002794.1 + 116687 0.67 0.877679
Target:  5'- gUCGAUcCGggagCCGGcCUCCAgCACCgCGUCg -3'
miRNA:   3'- uGGCUA-GCa---GGCU-GAGGU-GUGG-GCAG- -5'
10882 3' -57.4 NC_002794.1 + 80995 0.67 0.877679
Target:  5'- uCCGGucuggucaUCGUCCGACcCCGCA-UCGUCc -3'
miRNA:   3'- uGGCU--------AGCAGGCUGaGGUGUgGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 183982 0.68 0.840746
Target:  5'- cACCG--CGUCCGcCaCCGCGCCCGcCa -3'
miRNA:   3'- -UGGCuaGCAGGCuGaGGUGUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 44208 0.68 0.840746
Target:  5'- gGCCGA-CGUCCGGCUCgGgCGCCg--- -3'
miRNA:   3'- -UGGCUaGCAGGCUGAGgU-GUGGgcag -5'
10882 3' -57.4 NC_002794.1 + 81705 0.68 0.840746
Target:  5'- cGCCGAccaguUCG-CCGAC-CCACACCuccucuucgaCGUCc -3'
miRNA:   3'- -UGGCU-----AGCaGGCUGaGGUGUGG----------GCAG- -5'
10882 3' -57.4 NC_002794.1 + 186002 0.68 0.848509
Target:  5'- cGCCGggC-UCCGccGCUCCGgGCCCGg- -3'
miRNA:   3'- -UGGCuaGcAGGC--UGAGGUgUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 194722 0.68 0.832806
Target:  5'- aGCCGccgCGUCaCGaACUCCACGCaCCGc- -3'
miRNA:   3'- -UGGCua-GCAG-GC-UGAGGUGUG-GGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.