miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 71097 0.7 0.716854
Target:  5'- aGCCGGUCG-CCGGCggCCugGCCgGa- -3'
miRNA:   3'- -UGGCUAGCaGGCUGa-GGugUGGgCag -5'
10882 3' -57.4 NC_002794.1 + 28722 0.7 0.735885
Target:  5'- cGCCGc-CGUCCGACcgugUCCccgAgGCCCGUCg -3'
miRNA:   3'- -UGGCuaGCAGGCUG----AGG---UgUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 186305 0.7 0.735885
Target:  5'- gGCCGGUCG-CCG-CggCGCGCUCGUCc -3'
miRNA:   3'- -UGGCUAGCaGGCuGagGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 67017 0.7 0.745279
Target:  5'- uCCGGcggCGgcggCCGGCUCC-CGCCgCGUCg -3'
miRNA:   3'- uGGCUa--GCa---GGCUGAGGuGUGG-GCAG- -5'
10882 3' -57.4 NC_002794.1 + 131285 0.7 0.754581
Target:  5'- cGCCGG-CG-CCGucGCUCCGcCGCCCGUg -3'
miRNA:   3'- -UGGCUaGCaGGC--UGAGGU-GUGGGCAg -5'
10882 3' -57.4 NC_002794.1 + 24142 0.71 0.687822
Target:  5'- -gCGAccUC-UCCGACUCCugGCCCGa- -3'
miRNA:   3'- ugGCU--AGcAGGCUGAGGugUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 16590 0.71 0.678047
Target:  5'- cGCCGccGUC-UCCGGCgucgCCACcCCCGUCc -3'
miRNA:   3'- -UGGC--UAGcAGGCUGa---GGUGuGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 38506 0.71 0.668238
Target:  5'- cGCCGGUCGccgCCGcCUCCGCGauCCCagGUCg -3'
miRNA:   3'- -UGGCUAGCa--GGCuGAGGUGU--GGG--CAG- -5'
10882 3' -57.4 NC_002794.1 + 193390 0.71 0.66529
Target:  5'- cGCCG-UCGUCCGccucgcgcucgcCUCCGCcgccgccGCCCGUCg -3'
miRNA:   3'- -UGGCuAGCAGGCu-----------GAGGUG-------UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 190530 0.71 0.658402
Target:  5'- uGCCGAUCGUCguccaccagCGG-UCCGCGUCCGUCg -3'
miRNA:   3'- -UGGCUAGCAG---------GCUgAGGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 131369 0.71 0.658402
Target:  5'- cACCGcuUCGcCCGugguCggcgCCGCGCCCGUCa -3'
miRNA:   3'- -UGGCu-AGCaGGCu---Ga---GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 9164 0.71 0.687822
Target:  5'- aACCGGUCG-CgGGCuaagcuauuccUCCACGCCgGUCu -3'
miRNA:   3'- -UGGCUAGCaGgCUG-----------AGGUGUGGgCAG- -5'
10882 3' -57.4 NC_002794.1 + 102300 0.71 0.687822
Target:  5'- gGCCgGGUC-UUCGGCUCCgacGCGCUCGUCa -3'
miRNA:   3'- -UGG-CUAGcAGGCUGAGG---UGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 21385 0.71 0.687822
Target:  5'- cGCCGucucuuccUCGgacaccgCCGGCUCCACgaucucgaGCCCGUCc -3'
miRNA:   3'- -UGGCu-------AGCa------GGCUGAGGUG--------UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 68777 0.71 0.687822
Target:  5'- cGCCGGaCGcCCGGCUCuCGCGCCCc-- -3'
miRNA:   3'- -UGGCUaGCaGGCUGAG-GUGUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 185309 0.71 0.697553
Target:  5'- cCCGGUCGccccagugUCGcCUCCACACCCG-Cg -3'
miRNA:   3'- uGGCUAGCa-------GGCuGAGGUGUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 99859 0.71 0.697553
Target:  5'- gGCCGAgaccgucgugUCGgCCGACUCCAaggagcugaucCACCCGg- -3'
miRNA:   3'- -UGGCU----------AGCaGGCUGAGGU-----------GUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 16461 0.71 0.697553
Target:  5'- uCCGAcUCGUCCGGCUgCCcaGCCCGcCg -3'
miRNA:   3'- uGGCU-AGCAGGCUGA-GGugUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 133896 0.71 0.701431
Target:  5'- gGCUGcGUCGUCUggauucggucuacgaGACggcggCCGCGCCCGUCc -3'
miRNA:   3'- -UGGC-UAGCAGG---------------CUGa----GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 80424 0.71 0.648546
Target:  5'- cGCCGggCGgggccgccgCCGGCggCCGCcgGCCCGUCg -3'
miRNA:   3'- -UGGCuaGCa--------GGCUGa-GGUG--UGGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.