miRNA display CGI


Results 101 - 113 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 133896 0.71 0.701431
Target:  5'- gGCUGcGUCGUCUggauucggucuacgaGACggcggCCGCGCCCGUCc -3'
miRNA:   3'- -UGGC-UAGCAGG---------------CUGa----GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 190233 0.72 0.613015
Target:  5'- uCCGGUCGUccaugugcggacagcCCGACUCCGCuuCCaGUCg -3'
miRNA:   3'- uGGCUAGCA---------------GGCUGAGGUGugGG-CAG- -5'
10882 3' -57.4 NC_002794.1 + 178549 0.72 0.618934
Target:  5'- uGCCGAUCGggcaccaCGuCUUCACGCCgGUCu -3'
miRNA:   3'- -UGGCUAGCag-----GCuGAGGUGUGGgCAG- -5'
10882 3' -57.4 NC_002794.1 + 180026 0.73 0.550463
Target:  5'- gGCCGcggcCGUCCGAC-CCGCAUCaCGUCc -3'
miRNA:   3'- -UGGCua--GCAGGCUGaGGUGUGG-GCAG- -5'
10882 3' -57.4 NC_002794.1 + 156717 0.73 0.560134
Target:  5'- cACCGAUCGgUCGuuCUCCGCGgCUCGUCg -3'
miRNA:   3'- -UGGCUAGCaGGCu-GAGGUGU-GGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 193785 0.73 0.579611
Target:  5'- cGCuCGAUCGcCCGACgacgCCGgCGCCCGcUCg -3'
miRNA:   3'- -UG-GCUAGCaGGCUGa---GGU-GUGGGC-AG- -5'
10882 3' -57.4 NC_002794.1 + 15934 0.73 0.569852
Target:  5'- uACUGGauccccCGUCCGA--CCGCACCCGUCa -3'
miRNA:   3'- -UGGCUa-----GCAGGCUgaGGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 189990 0.75 0.431096
Target:  5'- -aCGGUcCGUCCGGgUCCAUcgGCCCGUCc -3'
miRNA:   3'- ugGCUA-GCAGGCUgAGGUG--UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 40611 0.77 0.365588
Target:  5'- cGCCGG-CGUCCGACUCCGCGgagUCCG-Cg -3'
miRNA:   3'- -UGGCUaGCAGGCUGAGGUGU---GGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 82926 0.78 0.328279
Target:  5'- cGCCGccGUCGccgcUCCGACUCCAgGCCCGcCg -3'
miRNA:   3'- -UGGC--UAGC----AGGCUGAGGUgUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 156204 0.8 0.258729
Target:  5'- cGCCGGUCGgagggCCGgcgacuccgccggcgGCUCCGCGCUCGUCg -3'
miRNA:   3'- -UGGCUAGCa----GGC---------------UGAGGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 111640 0.8 0.239119
Target:  5'- cGCCGGUCGggcgCCGcggccGCggCCACGCCCGUCg -3'
miRNA:   3'- -UGGCUAGCa---GGC-----UGa-GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 24114 1.08 0.003723
Target:  5'- gACCGAUCGUCCGACUCCACACCCGUCc -3'
miRNA:   3'- -UGGCUAGCAGGCUGAGGUGUGGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.