Results 61 - 80 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 80995 | 0.67 | 0.877679 |
Target: 5'- uCCGGucuggucaUCGUCCGACcCCGCA-UCGUCc -3' miRNA: 3'- uGGCU--------AGCAGGCUGaGGUGUgGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 116687 | 0.67 | 0.877679 |
Target: 5'- gUCGAUcCGggagCCGGcCUCCAgCACCgCGUCg -3' miRNA: 3'- uGGCUA-GCa---GGCU-GAGGU-GUGG-GCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 144033 | 0.67 | 0.877679 |
Target: 5'- aGCCGuAUC-UCCGGCgCCugGCcgCCGUCg -3' miRNA: 3'- -UGGC-UAGcAGGCUGaGGugUG--GGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 52799 | 0.67 | 0.877679 |
Target: 5'- aGCCGcUCGUCgGACgCCGgcaGCUCGUCc -3' miRNA: 3'- -UGGCuAGCAGgCUGaGGUg--UGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 44017 | 0.67 | 0.889761 |
Target: 5'- gGCCGG-CGUCCGcagaccgucgcuCUCCGCcCCCGg- -3' miRNA: 3'- -UGGCUaGCAGGCu-----------GAGGUGuGGGCag -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 18969 | 0.67 | 0.891061 |
Target: 5'- cACCucAUCGaCCGGCUCaacgugaGCGCCUGUCc -3' miRNA: 3'- -UGGc-UAGCaGGCUGAGg------UGUGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 55009 | 0.67 | 0.891061 |
Target: 5'- cGCCGggCGUCCGcCgCCGCGCCg--- -3' miRNA: 3'- -UGGCuaGCAGGCuGaGGUGUGGgcag -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 134820 | 0.67 | 0.863482 |
Target: 5'- cGCCGAUCgGUCCagcgacagcGACgaagaaCCGgGCCCGUUg -3' miRNA: 3'- -UGGCUAG-CAGG---------CUGa-----GGUgUGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 12159 | 0.67 | 0.864211 |
Target: 5'- gGCCGAUCGcccggaucgucgccgCCGACgccgCCGCGgCCGg- -3' miRNA: 3'- -UGGCUAGCa--------------GGCUGa---GGUGUgGGCag -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 188334 | 0.67 | 0.87068 |
Target: 5'- cGCCGc-CG-CCGGCggcgccgUCGCGCCCGUCc -3' miRNA: 3'- -UGGCuaGCaGGCUGa------GGUGUGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 72802 | 0.67 | 0.85609 |
Target: 5'- cGCCGcccUGcCCG-CUCCGuCGCCCGUCc -3' miRNA: 3'- -UGGCua-GCaGGCuGAGGU-GUGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 85467 | 0.67 | 0.85609 |
Target: 5'- gGCCGG-CGcCCGGcCUCCG-GCCUGUCg -3' miRNA: 3'- -UGGCUaGCaGGCU-GAGGUgUGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 152214 | 0.67 | 0.85609 |
Target: 5'- cCCGGaggCGUCgGACgUCgCGCGCCaCGUCg -3' miRNA: 3'- uGGCUa--GCAGgCUG-AG-GUGUGG-GCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 81419 | 0.67 | 0.85609 |
Target: 5'- aGCUGcUCGcCCGGCUucgagaCCGCGCCUGUg -3' miRNA: 3'- -UGGCuAGCaGGCUGA------GGUGUGGGCAg -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 59317 | 0.67 | 0.863482 |
Target: 5'- cACgGcgCGcCCGACUUCGcCGCCCGcCa -3' miRNA: 3'- -UGgCuaGCaGGCUGAGGU-GUGGGCaG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 57419 | 0.67 | 0.863482 |
Target: 5'- gGCCGG-CGUgcuggUCGGCaCgGCGCCCGUCa -3' miRNA: 3'- -UGGCUaGCA-----GGCUGaGgUGUGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 150782 | 0.67 | 0.863482 |
Target: 5'- gUCGGgcUCGUgCGACUCCAgGCCCc-- -3' miRNA: 3'- uGGCU--AGCAgGCUGAGGUgUGGGcag -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 61836 | 0.67 | 0.863482 |
Target: 5'- gGCCGG-CGUCacuccGCUCCGCGCCCc-- -3' miRNA: 3'- -UGGCUaGCAGgc---UGAGGUGUGGGcag -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 150606 | 0.67 | 0.863482 |
Target: 5'- gGCCGggCG-CCGGCUCUGCgggaGCUCGUg -3' miRNA: 3'- -UGGCuaGCaGGCUGAGGUG----UGGGCAg -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 191432 | 0.67 | 0.87068 |
Target: 5'- cCCGG--GUCCGGCUCuCACACCgGa- -3' miRNA: 3'- uGGCUagCAGGCUGAG-GUGUGGgCag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home