miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 150782 0.67 0.863482
Target:  5'- gUCGGgcUCGUgCGACUCCAgGCCCc-- -3'
miRNA:   3'- uGGCU--AGCAgGCUGAGGUgUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 61836 0.67 0.863482
Target:  5'- gGCCGG-CGUCacuccGCUCCGCGCCCc-- -3'
miRNA:   3'- -UGGCUaGCAGgc---UGAGGUGUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 150606 0.67 0.863482
Target:  5'- gGCCGggCG-CCGGCUCUGCgggaGCUCGUg -3'
miRNA:   3'- -UGGCuaGCaGGCUGAGGUG----UGGGCAg -5'
10882 3' -57.4 NC_002794.1 + 191432 0.67 0.87068
Target:  5'- cCCGG--GUCCGGCUCuCACACCgGa- -3'
miRNA:   3'- uGGCUagCAGGCUGAG-GUGUGGgCag -5'
10882 3' -57.4 NC_002794.1 + 188334 0.67 0.87068
Target:  5'- cGCCGc-CG-CCGGCggcgccgUCGCGCCCGUCc -3'
miRNA:   3'- -UGGCuaGCaGGCUGa------GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 12159 0.67 0.864211
Target:  5'- gGCCGAUCGcccggaucgucgccgCCGACgccgCCGCGgCCGg- -3'
miRNA:   3'- -UGGCUAGCa--------------GGCUGa---GGUGUgGGCag -5'
10882 3' -57.4 NC_002794.1 + 19244 0.66 0.909541
Target:  5'- aGCCGAUgaUGUgCCGACcggCCGCGgccCCCGUg -3'
miRNA:   3'- -UGGCUA--GCA-GGCUGa--GGUGU---GGGCAg -5'
10882 3' -57.4 NC_002794.1 + 83872 0.66 0.909541
Target:  5'- cCCGGUCGgcgcgacggCCccgGGCUCgGCGCCCGa- -3'
miRNA:   3'- uGGCUAGCa--------GG---CUGAGgUGUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 73658 0.66 0.915264
Target:  5'- gGCCGAcacgaacacCGUCCuGgUCCACuACCCGUUc -3'
miRNA:   3'- -UGGCUa--------GCAGGcUgAGGUG-UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 43783 0.66 0.914702
Target:  5'- cGCCGAacgccccgCGUCCGacccgccGCUCCGgGCCCa-- -3'
miRNA:   3'- -UGGCUa-------GCAGGC-------UGAGGUgUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 92045 0.66 0.920767
Target:  5'- cGCCGugaaccugUGUCCGGCgugCCGCGgCCGg- -3'
miRNA:   3'- -UGGCua------GCAGGCUGa--GGUGUgGGCag -5'
10882 3' -57.4 NC_002794.1 + 58015 0.66 0.920767
Target:  5'- cGCCGGggcCGccgCCGGCgaacccgCCGCgccGCCCGUCc -3'
miRNA:   3'- -UGGCUa--GCa--GGCUGa------GGUG---UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 23590 0.66 0.903598
Target:  5'- cGCCGAUCcaCCGA-UCCGCcgACCCGa- -3'
miRNA:   3'- -UGGCUAGcaGGCUgAGGUG--UGGGCag -5'
10882 3' -57.4 NC_002794.1 + 17546 0.66 0.903598
Target:  5'- aGCCGAUCGaggaagcggugUCCgGACUCCAaacCGCaCCGg- -3'
miRNA:   3'- -UGGCUAGC-----------AGG-CUGAGGU---GUG-GGCag -5'
10882 3' -57.4 NC_002794.1 + 145830 0.66 0.897437
Target:  5'- aGCCGAgcgCGU-CGACggucgCCACGCUCGa- -3'
miRNA:   3'- -UGGCUa--GCAgGCUGa----GGUGUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 32693 0.66 0.903598
Target:  5'- uCCGGaggCGUCgcgggCGACUcgCCGcCACCCGUCg -3'
miRNA:   3'- uGGCUa--GCAG-----GCUGA--GGU-GUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 183610 0.66 0.903598
Target:  5'- gGCCGcgCGcggCCGGCgcccCCGCGCCCc-- -3'
miRNA:   3'- -UGGCuaGCa--GGCUGa---GGUGUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 118280 0.66 0.909541
Target:  5'- cGCCGG-CGUCgGGgaCCGCGCCgggcgCGUCg -3'
miRNA:   3'- -UGGCUaGCAGgCUgaGGUGUGG-----GCAG- -5'
10882 3' -57.4 NC_002794.1 + 67888 0.66 0.897437
Target:  5'- uCCGAg---CgGACUCCcccuCGCCCGUCu -3'
miRNA:   3'- uGGCUagcaGgCUGAGGu---GUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 137398 0.66 0.897437
Target:  5'- uCCGGUCuGUCCGGCgUCCGCggACgCCG-Cg -3'
miRNA:   3'- uGGCUAG-CAGGCUG-AGGUG--UG-GGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.