miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 117563 0.69 0.78185
Target:  5'- aGCCGGUCGUgCag--CC-CGCCCGUCg -3'
miRNA:   3'- -UGGCUAGCAgGcugaGGuGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 53972 0.69 0.799418
Target:  5'- uCCGcucCGUCCGGCUgccCCGCGCCagCGUCu -3'
miRNA:   3'- uGGCua-GCAGGCUGA---GGUGUGG--GCAG- -5'
10882 3' -57.4 NC_002794.1 + 50886 0.68 0.806291
Target:  5'- aGCUGGUCGaacacgaacccgCCGACUCCAgCugCCGg- -3'
miRNA:   3'- -UGGCUAGCa-----------GGCUGAGGU-GugGGCag -5'
10882 3' -57.4 NC_002794.1 + 30100 0.68 0.824696
Target:  5'- gGCCGGUC--CCGAC-CCAcCGCCCGg- -3'
miRNA:   3'- -UGGCUAGcaGGCUGaGGU-GUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 63344 0.68 0.824696
Target:  5'- gACCGGUCGcUCGccCUCuCGCuCCCGUCg -3'
miRNA:   3'- -UGGCUAGCaGGCu-GAG-GUGuGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 126093 0.68 0.832003
Target:  5'- gGCCGAcCGacuggcuUCCGGCccugggcgCCGCGCUCGUCu -3'
miRNA:   3'- -UGGCUaGC-------AGGCUGa-------GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 194722 0.68 0.832806
Target:  5'- aGCCGccgCGUCaCGaACUCCACGCaCCGc- -3'
miRNA:   3'- -UGGCua-GCAG-GC-UGAGGUGUG-GGCag -5'
10882 3' -57.4 NC_002794.1 + 1210 0.68 0.832806
Target:  5'- gGCCGAUCGgggccCCGGggcgugUUCUAUaACCCGUCu -3'
miRNA:   3'- -UGGCUAGCa----GGCU------GAGGUG-UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 179107 0.68 0.832806
Target:  5'- uCCGGUCGUCCGcGgUCCggGCGCgCgGUCg -3'
miRNA:   3'- uGGCUAGCAGGC-UgAGG--UGUG-GgCAG- -5'
10882 3' -57.4 NC_002794.1 + 44375 0.68 0.832806
Target:  5'- gGCgCGA-CGUCCGcgacGCUCgaCGCGCCCGUUc -3'
miRNA:   3'- -UG-GCUaGCAGGC----UGAG--GUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 91639 0.68 0.832806
Target:  5'- cGCCGccUGUCCGAgCUgaagCUGCACCUGUCg -3'
miRNA:   3'- -UGGCuaGCAGGCU-GA----GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 48542 0.68 0.832806
Target:  5'- uCgGGUCGgCCGACcacUCCGCcggccGCCCGUCc -3'
miRNA:   3'- uGgCUAGCaGGCUG---AGGUG-----UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 119587 0.68 0.832806
Target:  5'- cGCCGAaCGUCCGucgcagucGCUCCAgCGCCuCGa- -3'
miRNA:   3'- -UGGCUaGCAGGC--------UGAGGU-GUGG-GCag -5'
10882 3' -57.4 NC_002794.1 + 44208 0.68 0.840746
Target:  5'- gGCCGA-CGUCCGGCUCgGgCGCCg--- -3'
miRNA:   3'- -UGGCUaGCAGGCUGAGgU-GUGGgcag -5'
10882 3' -57.4 NC_002794.1 + 183982 0.68 0.840746
Target:  5'- cACCG--CGUCCGcCaCCGCGCCCGcCa -3'
miRNA:   3'- -UGGCuaGCAGGCuGaGGUGUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 81705 0.68 0.840746
Target:  5'- cGCCGAccaguUCG-CCGAC-CCACACCuccucuucgaCGUCc -3'
miRNA:   3'- -UGGCU-----AGCaGGCUGaGGUGUGG----------GCAG- -5'
10882 3' -57.4 NC_002794.1 + 16431 0.68 0.848509
Target:  5'- cCCGA-CG-CCGAgUCCGCGCuuGUUc -3'
miRNA:   3'- uGGCUaGCaGGCUgAGGUGUGggCAG- -5'
10882 3' -57.4 NC_002794.1 + 186002 0.68 0.848509
Target:  5'- cGCCGggC-UCCGccGCUCCGgGCCCGg- -3'
miRNA:   3'- -UGGCuaGcAGGC--UGAGGUgUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 72802 0.67 0.85609
Target:  5'- cGCCGcccUGcCCG-CUCCGuCGCCCGUCc -3'
miRNA:   3'- -UGGCua-GCaGGCuGAGGU-GUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 152214 0.67 0.85609
Target:  5'- cCCGGaggCGUCgGACgUCgCGCGCCaCGUCg -3'
miRNA:   3'- uGGCUa--GCAGgCUG-AG-GUGUGG-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.