miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 85467 0.67 0.85609
Target:  5'- gGCCGG-CGcCCGGcCUCCG-GCCUGUCg -3'
miRNA:   3'- -UGGCUaGCaGGCU-GAGGUgUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 72802 0.67 0.85609
Target:  5'- cGCCGcccUGcCCG-CUCCGuCGCCCGUCc -3'
miRNA:   3'- -UGGCua-GCaGGCuGAGGU-GUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 59317 0.67 0.863482
Target:  5'- cACgGcgCGcCCGACUUCGcCGCCCGcCa -3'
miRNA:   3'- -UGgCuaGCaGGCUGAGGU-GUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 150606 0.67 0.863482
Target:  5'- gGCCGggCG-CCGGCUCUGCgggaGCUCGUg -3'
miRNA:   3'- -UGGCuaGCaGGCUGAGGUG----UGGGCAg -5'
10882 3' -57.4 NC_002794.1 + 61836 0.67 0.863482
Target:  5'- gGCCGG-CGUCacuccGCUCCGCGCCCc-- -3'
miRNA:   3'- -UGGCUaGCAGgc---UGAGGUGUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 150782 0.67 0.863482
Target:  5'- gUCGGgcUCGUgCGACUCCAgGCCCc-- -3'
miRNA:   3'- uGGCU--AGCAgGCUGAGGUgUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 57419 0.67 0.863482
Target:  5'- gGCCGG-CGUgcuggUCGGCaCgGCGCCCGUCa -3'
miRNA:   3'- -UGGCUaGCA-----GGCUGaGgUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 134820 0.67 0.863482
Target:  5'- cGCCGAUCgGUCCagcgacagcGACgaagaaCCGgGCCCGUUg -3'
miRNA:   3'- -UGGCUAG-CAGG---------CUGa-----GGUgUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 151917 0.67 0.863482
Target:  5'- gGCCGAgcucCGUCUGcggcgcaagcGCUCCGcCGCCCG-Cg -3'
miRNA:   3'- -UGGCUa---GCAGGC----------UGAGGU-GUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 12159 0.67 0.864211
Target:  5'- gGCCGAUCGcccggaucgucgccgCCGACgccgCCGCGgCCGg- -3'
miRNA:   3'- -UGGCUAGCa--------------GGCUGa---GGUGUgGGCag -5'
10882 3' -57.4 NC_002794.1 + 188334 0.67 0.87068
Target:  5'- cGCCGc-CG-CCGGCggcgccgUCGCGCCCGUCc -3'
miRNA:   3'- -UGGCuaGCaGGCUGa------GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 191432 0.67 0.87068
Target:  5'- cCCGG--GUCCGGCUCuCACACCgGa- -3'
miRNA:   3'- uGGCUagCAGGCUGAG-GUGUGGgCag -5'
10882 3' -57.4 NC_002794.1 + 67841 0.67 0.87068
Target:  5'- cGCCG-UCGcCCGGCgCCGcCGCgCGUCa -3'
miRNA:   3'- -UGGCuAGCaGGCUGaGGU-GUGgGCAG- -5'
10882 3' -57.4 NC_002794.1 + 128849 0.67 0.877679
Target:  5'- cGCCGG-CGUCgaCGACgCCGCugCCGcCg -3'
miRNA:   3'- -UGGCUaGCAG--GCUGaGGUGugGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 52799 0.67 0.877679
Target:  5'- aGCCGcUCGUCgGACgCCGgcaGCUCGUCc -3'
miRNA:   3'- -UGGCuAGCAGgCUGaGGUg--UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 144033 0.67 0.877679
Target:  5'- aGCCGuAUC-UCCGGCgCCugGCcgCCGUCg -3'
miRNA:   3'- -UGGC-UAGcAGGCUGaGGugUG--GGCAG- -5'
10882 3' -57.4 NC_002794.1 + 80995 0.67 0.877679
Target:  5'- uCCGGucuggucaUCGUCCGACcCCGCA-UCGUCc -3'
miRNA:   3'- uGGCU--------AGCAGGCUGaGGUGUgGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 116687 0.67 0.877679
Target:  5'- gUCGAUcCGggagCCGGcCUCCAgCACCgCGUCg -3'
miRNA:   3'- uGGCUA-GCa---GGCU-GAGGU-GUGG-GCAG- -5'
10882 3' -57.4 NC_002794.1 + 80890 0.67 0.881781
Target:  5'- cCCGAUCccCCGGCggcccucgacgacCCGCGCCCGcUCg -3'
miRNA:   3'- uGGCUAGcaGGCUGa------------GGUGUGGGC-AG- -5'
10882 3' -57.4 NC_002794.1 + 31385 0.67 0.884474
Target:  5'- cCCG-UCGUCggCGGCcccgCCGCGCCCGcCg -3'
miRNA:   3'- uGGCuAGCAG--GCUGa---GGUGUGGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.