miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 23590 0.66 0.903598
Target:  5'- cGCCGAUCcaCCGA-UCCGCcgACCCGa- -3'
miRNA:   3'- -UGGCUAGcaGGCUgAGGUG--UGGGCag -5'
10882 3' -57.4 NC_002794.1 + 131152 0.66 0.903598
Target:  5'- uCCGGUCGcacgCCaGCaCgGCGCCCGUCu -3'
miRNA:   3'- uGGCUAGCa---GGcUGaGgUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 146021 0.66 0.903598
Target:  5'- cGCCGucccaGUCCGcucgauCUCCGgGaCCCGUCg -3'
miRNA:   3'- -UGGCuag--CAGGCu-----GAGGUgU-GGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 122152 0.66 0.903598
Target:  5'- cGCCGGccgUGUCCGACUaCCugGCCg--- -3'
miRNA:   3'- -UGGCUa--GCAGGCUGA-GGugUGGgcag -5'
10882 3' -57.4 NC_002794.1 + 145830 0.66 0.897437
Target:  5'- aGCCGAgcgCGU-CGACggucgCCACGCUCGa- -3'
miRNA:   3'- -UGGCUa--GCAgGCUGa----GGUGUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 67888 0.66 0.897437
Target:  5'- uCCGAg---CgGACUCCcccuCGCCCGUCu -3'
miRNA:   3'- uGGCUagcaGgCUGAGGu---GUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 137398 0.66 0.897437
Target:  5'- uCCGGUCuGUCCGGCgUCCGCggACgCCG-Cg -3'
miRNA:   3'- uGGCUAG-CAGGCUG-AGGUG--UG-GGCaG- -5'
10882 3' -57.4 NC_002794.1 + 18969 0.67 0.891061
Target:  5'- cACCucAUCGaCCGGCUCaacgugaGCGCCUGUCc -3'
miRNA:   3'- -UGGc-UAGCaGGCUGAGg------UGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 55009 0.67 0.891061
Target:  5'- cGCCGggCGUCCGcCgCCGCGCCg--- -3'
miRNA:   3'- -UGGCuaGCAGGCuGaGGUGUGGgcag -5'
10882 3' -57.4 NC_002794.1 + 193698 0.67 0.891061
Target:  5'- uCCGA--GUCCGAUUCCcccuCGCCCGcCc -3'
miRNA:   3'- uGGCUagCAGGCUGAGGu---GUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 44017 0.67 0.889761
Target:  5'- gGCCGG-CGUCCGcagaccgucgcuCUCCGCcCCCGg- -3'
miRNA:   3'- -UGGCUaGCAGGCu-----------GAGGUGuGGGCag -5'
10882 3' -57.4 NC_002794.1 + 31385 0.67 0.884474
Target:  5'- cCCG-UCGUCggCGGCcccgCCGCGCCCGcCg -3'
miRNA:   3'- uGGCuAGCAG--GCUGa---GGUGUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 29202 0.67 0.884474
Target:  5'- uCCGucCGUCCGGCggUCgGCGgCCGUCg -3'
miRNA:   3'- uGGCuaGCAGGCUG--AGgUGUgGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 59127 0.67 0.884474
Target:  5'- cACCGAgg--CCGACUUCGCgcaggGCCgCGUCg -3'
miRNA:   3'- -UGGCUagcaGGCUGAGGUG-----UGG-GCAG- -5'
10882 3' -57.4 NC_002794.1 + 80890 0.67 0.881781
Target:  5'- cCCGAUCccCCGGCggcccucgacgacCCGCGCCCGcUCg -3'
miRNA:   3'- uGGCUAGcaGGCUGa------------GGUGUGGGC-AG- -5'
10882 3' -57.4 NC_002794.1 + 128849 0.67 0.877679
Target:  5'- cGCCGG-CGUCgaCGACgCCGCugCCGcCg -3'
miRNA:   3'- -UGGCUaGCAG--GCUGaGGUGugGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 52799 0.67 0.877679
Target:  5'- aGCCGcUCGUCgGACgCCGgcaGCUCGUCc -3'
miRNA:   3'- -UGGCuAGCAGgCUGaGGUg--UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 144033 0.67 0.877679
Target:  5'- aGCCGuAUC-UCCGGCgCCugGCcgCCGUCg -3'
miRNA:   3'- -UGGC-UAGcAGGCUGaGGugUG--GGCAG- -5'
10882 3' -57.4 NC_002794.1 + 116687 0.67 0.877679
Target:  5'- gUCGAUcCGggagCCGGcCUCCAgCACCgCGUCg -3'
miRNA:   3'- uGGCUA-GCa---GGCU-GAGGU-GUGG-GCAG- -5'
10882 3' -57.4 NC_002794.1 + 80995 0.67 0.877679
Target:  5'- uCCGGucuggucaUCGUCCGACcCCGCA-UCGUCc -3'
miRNA:   3'- uGGCU--------AGCAGGCUGaGGUGUgGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.