miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 67841 0.67 0.87068
Target:  5'- cGCCG-UCGcCCGGCgCCGcCGCgCGUCa -3'
miRNA:   3'- -UGGCuAGCaGGCUGaGGU-GUGgGCAG- -5'
10882 3' -57.4 NC_002794.1 + 188334 0.67 0.87068
Target:  5'- cGCCGc-CG-CCGGCggcgccgUCGCGCCCGUCc -3'
miRNA:   3'- -UGGCuaGCaGGCUGa------GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 191432 0.67 0.87068
Target:  5'- cCCGG--GUCCGGCUCuCACACCgGa- -3'
miRNA:   3'- uGGCUagCAGGCUGAG-GUGUGGgCag -5'
10882 3' -57.4 NC_002794.1 + 12159 0.67 0.864211
Target:  5'- gGCCGAUCGcccggaucgucgccgCCGACgccgCCGCGgCCGg- -3'
miRNA:   3'- -UGGCUAGCa--------------GGCUGa---GGUGUgGGCag -5'
10882 3' -57.4 NC_002794.1 + 59317 0.67 0.863482
Target:  5'- cACgGcgCGcCCGACUUCGcCGCCCGcCa -3'
miRNA:   3'- -UGgCuaGCaGGCUGAGGU-GUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 57419 0.67 0.863482
Target:  5'- gGCCGG-CGUgcuggUCGGCaCgGCGCCCGUCa -3'
miRNA:   3'- -UGGCUaGCA-----GGCUGaGgUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 150782 0.67 0.863482
Target:  5'- gUCGGgcUCGUgCGACUCCAgGCCCc-- -3'
miRNA:   3'- uGGCU--AGCAgGCUGAGGUgUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 61836 0.67 0.863482
Target:  5'- gGCCGG-CGUCacuccGCUCCGCGCCCc-- -3'
miRNA:   3'- -UGGCUaGCAGgc---UGAGGUGUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 150606 0.67 0.863482
Target:  5'- gGCCGggCG-CCGGCUCUGCgggaGCUCGUg -3'
miRNA:   3'- -UGGCuaGCaGGCUGAGGUG----UGGGCAg -5'
10882 3' -57.4 NC_002794.1 + 134820 0.67 0.863482
Target:  5'- cGCCGAUCgGUCCagcgacagcGACgaagaaCCGgGCCCGUUg -3'
miRNA:   3'- -UGGCUAG-CAGG---------CUGa-----GGUgUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 151917 0.67 0.863482
Target:  5'- gGCCGAgcucCGUCUGcggcgcaagcGCUCCGcCGCCCG-Cg -3'
miRNA:   3'- -UGGCUa---GCAGGC----------UGAGGU-GUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 72802 0.67 0.85609
Target:  5'- cGCCGcccUGcCCG-CUCCGuCGCCCGUCc -3'
miRNA:   3'- -UGGCua-GCaGGCuGAGGU-GUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 85467 0.67 0.85609
Target:  5'- gGCCGG-CGcCCGGcCUCCG-GCCUGUCg -3'
miRNA:   3'- -UGGCUaGCaGGCU-GAGGUgUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 152214 0.67 0.85609
Target:  5'- cCCGGaggCGUCgGACgUCgCGCGCCaCGUCg -3'
miRNA:   3'- uGGCUa--GCAGgCUG-AG-GUGUGG-GCAG- -5'
10882 3' -57.4 NC_002794.1 + 81419 0.67 0.85609
Target:  5'- aGCUGcUCGcCCGGCUucgagaCCGCGCCUGUg -3'
miRNA:   3'- -UGGCuAGCaGGCUGA------GGUGUGGGCAg -5'
10882 3' -57.4 NC_002794.1 + 16431 0.68 0.848509
Target:  5'- cCCGA-CG-CCGAgUCCGCGCuuGUUc -3'
miRNA:   3'- uGGCUaGCaGGCUgAGGUGUGggCAG- -5'
10882 3' -57.4 NC_002794.1 + 186002 0.68 0.848509
Target:  5'- cGCCGggC-UCCGccGCUCCGgGCCCGg- -3'
miRNA:   3'- -UGGCuaGcAGGC--UGAGGUgUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 81705 0.68 0.840746
Target:  5'- cGCCGAccaguUCG-CCGAC-CCACACCuccucuucgaCGUCc -3'
miRNA:   3'- -UGGCU-----AGCaGGCUGaGGUGUGG----------GCAG- -5'
10882 3' -57.4 NC_002794.1 + 44208 0.68 0.840746
Target:  5'- gGCCGA-CGUCCGGCUCgGgCGCCg--- -3'
miRNA:   3'- -UGGCUaGCAGGCUGAGgU-GUGGgcag -5'
10882 3' -57.4 NC_002794.1 + 183982 0.68 0.840746
Target:  5'- cACCG--CGUCCGcCaCCGCGCCCGcCa -3'
miRNA:   3'- -UGGCuaGCAGGCuGaGGUGUGGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.