Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 44375 | 0.68 | 0.832806 |
Target: 5'- gGCgCGA-CGUCCGcgacGCUCgaCGCGCCCGUUc -3' miRNA: 3'- -UG-GCUaGCAGGC----UGAG--GUGUGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 1210 | 0.68 | 0.832806 |
Target: 5'- gGCCGAUCGgggccCCGGggcgugUUCUAUaACCCGUCu -3' miRNA: 3'- -UGGCUAGCa----GGCU------GAGGUG-UGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 48542 | 0.68 | 0.832806 |
Target: 5'- uCgGGUCGgCCGACcacUCCGCcggccGCCCGUCc -3' miRNA: 3'- uGgCUAGCaGGCUG---AGGUG-----UGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 91639 | 0.68 | 0.832806 |
Target: 5'- cGCCGccUGUCCGAgCUgaagCUGCACCUGUCg -3' miRNA: 3'- -UGGCuaGCAGGCU-GA----GGUGUGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 119587 | 0.68 | 0.832806 |
Target: 5'- cGCCGAaCGUCCGucgcagucGCUCCAgCGCCuCGa- -3' miRNA: 3'- -UGGCUaGCAGGC--------UGAGGU-GUGG-GCag -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 179107 | 0.68 | 0.832806 |
Target: 5'- uCCGGUCGUCCGcGgUCCggGCGCgCgGUCg -3' miRNA: 3'- uGGCUAGCAGGC-UgAGG--UGUG-GgCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 194722 | 0.68 | 0.832806 |
Target: 5'- aGCCGccgCGUCaCGaACUCCACGCaCCGc- -3' miRNA: 3'- -UGGCua-GCAG-GC-UGAGGUGUG-GGCag -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 126093 | 0.68 | 0.832003 |
Target: 5'- gGCCGAcCGacuggcuUCCGGCccugggcgCCGCGCUCGUCu -3' miRNA: 3'- -UGGCUaGC-------AGGCUGa-------GGUGUGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 30100 | 0.68 | 0.824696 |
Target: 5'- gGCCGGUC--CCGAC-CCAcCGCCCGg- -3' miRNA: 3'- -UGGCUAGcaGGCUGaGGU-GUGGGCag -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 63344 | 0.68 | 0.824696 |
Target: 5'- gACCGGUCGcUCGccCUCuCGCuCCCGUCg -3' miRNA: 3'- -UGGCUAGCaGGCu-GAG-GUGuGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 50886 | 0.68 | 0.806291 |
Target: 5'- aGCUGGUCGaacacgaacccgCCGACUCCAgCugCCGg- -3' miRNA: 3'- -UGGCUAGCa-----------GGCUGAGGU-GugGGCag -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 53972 | 0.69 | 0.799418 |
Target: 5'- uCCGcucCGUCCGGCUgccCCGCGCCagCGUCu -3' miRNA: 3'- uGGCua-GCAGGCUGA---GGUGUGG--GCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 101361 | 0.69 | 0.78185 |
Target: 5'- gGCCG--UGUUCGACUUCGCcagucuguACCCGUCc -3' miRNA: 3'- -UGGCuaGCAGGCUGAGGUG--------UGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 67225 | 0.69 | 0.78185 |
Target: 5'- cGCCGGgcggcuaaccgCGUCuCGAUUCCGCGCagcaCGUCc -3' miRNA: 3'- -UGGCUa----------GCAG-GCUGAGGUGUGg---GCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 117563 | 0.69 | 0.78185 |
Target: 5'- aGCCGGUCGUgCag--CC-CGCCCGUCg -3' miRNA: 3'- -UGGCUAGCAgGcugaGGuGUGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 193290 | 0.69 | 0.78185 |
Target: 5'- cGCCGGUagucgcCGUCCG-CUCCGCgccgcacgcagcGCCCGaUCg -3' miRNA: 3'- -UGGCUA------GCAGGCuGAGGUG------------UGGGC-AG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 71756 | 0.69 | 0.763782 |
Target: 5'- cGCCGGcUCuUCCGACcggUCCGCG-CCGUCg -3' miRNA: 3'- -UGGCU-AGcAGGCUG---AGGUGUgGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 16255 | 0.69 | 0.763782 |
Target: 5'- cGCCGAguacUCGUUCGAUcgcgCCGCGCCCcuGUUg -3' miRNA: 3'- -UGGCU----AGCAGGCUGa---GGUGUGGG--CAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 131285 | 0.7 | 0.754581 |
Target: 5'- cGCCGG-CG-CCGucGCUCCGcCGCCCGUg -3' miRNA: 3'- -UGGCUaGCaGGC--UGAGGU-GUGGGCAg -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 67017 | 0.7 | 0.745279 |
Target: 5'- uCCGGcggCGgcggCCGGCUCC-CGCCgCGUCg -3' miRNA: 3'- uGGCUa--GCa---GGCUGAGGuGUGG-GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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