miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 1210 0.68 0.832806
Target:  5'- gGCCGAUCGgggccCCGGggcgugUUCUAUaACCCGUCu -3'
miRNA:   3'- -UGGCUAGCa----GGCU------GAGGUG-UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 9164 0.71 0.687822
Target:  5'- aACCGGUCG-CgGGCuaagcuauuccUCCACGCCgGUCu -3'
miRNA:   3'- -UGGCUAGCaGgCUG-----------AGGUGUGGgCAG- -5'
10882 3' -57.4 NC_002794.1 + 12159 0.67 0.864211
Target:  5'- gGCCGAUCGcccggaucgucgccgCCGACgccgCCGCGgCCGg- -3'
miRNA:   3'- -UGGCUAGCa--------------GGCUGa---GGUGUgGGCag -5'
10882 3' -57.4 NC_002794.1 + 15934 0.73 0.569852
Target:  5'- uACUGGauccccCGUCCGA--CCGCACCCGUCa -3'
miRNA:   3'- -UGGCUa-----GCAGGCUgaGGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 16255 0.69 0.763782
Target:  5'- cGCCGAguacUCGUUCGAUcgcgCCGCGCCCcuGUUg -3'
miRNA:   3'- -UGGCU----AGCAGGCUGa---GGUGUGGG--CAG- -5'
10882 3' -57.4 NC_002794.1 + 16431 0.68 0.848509
Target:  5'- cCCGA-CG-CCGAgUCCGCGCuuGUUc -3'
miRNA:   3'- uGGCUaGCaGGCUgAGGUGUGggCAG- -5'
10882 3' -57.4 NC_002794.1 + 16461 0.71 0.697553
Target:  5'- uCCGAcUCGUCCGGCUgCCcaGCCCGcCg -3'
miRNA:   3'- uGGCU-AGCAGGCUGA-GGugUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 16590 0.71 0.678047
Target:  5'- cGCCGccGUC-UCCGGCgucgCCACcCCCGUCc -3'
miRNA:   3'- -UGGC--UAGcAGGCUGa---GGUGuGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 17546 0.66 0.903598
Target:  5'- aGCCGAUCGaggaagcggugUCCgGACUCCAaacCGCaCCGg- -3'
miRNA:   3'- -UGGCUAGC-----------AGG-CUGAGGU---GUG-GGCag -5'
10882 3' -57.4 NC_002794.1 + 18969 0.67 0.891061
Target:  5'- cACCucAUCGaCCGGCUCaacgugaGCGCCUGUCc -3'
miRNA:   3'- -UGGc-UAGCaGGCUGAGg------UGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 19244 0.66 0.909541
Target:  5'- aGCCGAUgaUGUgCCGACcggCCGCGgccCCCGUg -3'
miRNA:   3'- -UGGCUA--GCA-GGCUGa--GGUGU---GGGCAg -5'
10882 3' -57.4 NC_002794.1 + 21385 0.71 0.687822
Target:  5'- cGCCGucucuuccUCGgacaccgCCGGCUCCACgaucucgaGCCCGUCc -3'
miRNA:   3'- -UGGCu-------AGCa------GGCUGAGGUG--------UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 21963 0.7 0.735885
Target:  5'- gGCCGcucccgCGgcgCCGucguCUCCGCgACCCGUCg -3'
miRNA:   3'- -UGGCua----GCa--GGCu---GAGGUG-UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 23590 0.66 0.903598
Target:  5'- cGCCGAUCcaCCGA-UCCGCcgACCCGa- -3'
miRNA:   3'- -UGGCUAGcaGGCUgAGGUG--UGGGCag -5'
10882 3' -57.4 NC_002794.1 + 24114 1.08 0.003723
Target:  5'- gACCGAUCGUCCGACUCCACACCCGUCc -3'
miRNA:   3'- -UGGCUAGCAGGCUGAGGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 24142 0.71 0.687822
Target:  5'- -gCGAccUC-UCCGACUCCugGCCCGa- -3'
miRNA:   3'- ugGCU--AGcAGGCUGAGGugUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 28722 0.7 0.735885
Target:  5'- cGCCGc-CGUCCGACcgugUCCccgAgGCCCGUCg -3'
miRNA:   3'- -UGGCuaGCAGGCUG----AGG---UgUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 29202 0.67 0.884474
Target:  5'- uCCGucCGUCCGGCggUCgGCGgCCGUCg -3'
miRNA:   3'- uGGCuaGCAGGCUG--AGgUGUgGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 29860 0.66 0.926047
Target:  5'- gAUCGAggaaUCGUCCcGCUCC-CACCCc-- -3'
miRNA:   3'- -UGGCU----AGCAGGcUGAGGuGUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 30100 0.68 0.824696
Target:  5'- gGCCGGUC--CCGAC-CCAcCGCCCGg- -3'
miRNA:   3'- -UGGCUAGcaGGCUGaGGU-GUGGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.