miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 61836 0.67 0.863482
Target:  5'- gGCCGG-CGUCacuccGCUCCGCGCCCc-- -3'
miRNA:   3'- -UGGCUaGCAGgc---UGAGGUGUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 63344 0.68 0.824696
Target:  5'- gACCGGUCGcUCGccCUCuCGCuCCCGUCg -3'
miRNA:   3'- -UGGCUAGCaGGCu-GAG-GUGuGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 67017 0.7 0.745279
Target:  5'- uCCGGcggCGgcggCCGGCUCC-CGCCgCGUCg -3'
miRNA:   3'- uGGCUa--GCa---GGCUGAGGuGUGG-GCAG- -5'
10882 3' -57.4 NC_002794.1 + 67225 0.69 0.78185
Target:  5'- cGCCGGgcggcuaaccgCGUCuCGAUUCCGCGCagcaCGUCc -3'
miRNA:   3'- -UGGCUa----------GCAG-GCUGAGGUGUGg---GCAG- -5'
10882 3' -57.4 NC_002794.1 + 67841 0.67 0.87068
Target:  5'- cGCCG-UCGcCCGGCgCCGcCGCgCGUCa -3'
miRNA:   3'- -UGGCuAGCaGGCUGaGGU-GUGgGCAG- -5'
10882 3' -57.4 NC_002794.1 + 67888 0.66 0.897437
Target:  5'- uCCGAg---CgGACUCCcccuCGCCCGUCu -3'
miRNA:   3'- uGGCUagcaGgCUGAGGu---GUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 68777 0.71 0.687822
Target:  5'- cGCCGGaCGcCCGGCUCuCGCGCCCc-- -3'
miRNA:   3'- -UGGCUaGCaGGCUGAG-GUGUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 71097 0.7 0.716854
Target:  5'- aGCCGGUCG-CCGGCggCCugGCCgGa- -3'
miRNA:   3'- -UGGCUAGCaGGCUGa-GGugUGGgCag -5'
10882 3' -57.4 NC_002794.1 + 71756 0.69 0.763782
Target:  5'- cGCCGGcUCuUCCGACcggUCCGCG-CCGUCg -3'
miRNA:   3'- -UGGCU-AGcAGGCUG---AGGUGUgGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 72802 0.67 0.85609
Target:  5'- cGCCGcccUGcCCG-CUCCGuCGCCCGUCc -3'
miRNA:   3'- -UGGCua-GCaGGCuGAGGU-GUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 73658 0.66 0.915264
Target:  5'- gGCCGAcacgaacacCGUCCuGgUCCACuACCCGUUc -3'
miRNA:   3'- -UGGCUa--------GCAGGcUgAGGUG-UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 75263 0.66 0.920767
Target:  5'- aACCGAc---CCGGCUCCACcgcccACCCGg- -3'
miRNA:   3'- -UGGCUagcaGGCUGAGGUG-----UGGGCag -5'
10882 3' -57.4 NC_002794.1 + 80424 0.71 0.648546
Target:  5'- cGCCGggCGgggccgccgCCGGCggCCGCcgGCCCGUCg -3'
miRNA:   3'- -UGGCuaGCa--------GGCUGa-GGUG--UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 80890 0.67 0.881781
Target:  5'- cCCGAUCccCCGGCggcccucgacgacCCGCGCCCGcUCg -3'
miRNA:   3'- uGGCUAGcaGGCUGa------------GGUGUGGGC-AG- -5'
10882 3' -57.4 NC_002794.1 + 80995 0.67 0.877679
Target:  5'- uCCGGucuggucaUCGUCCGACcCCGCA-UCGUCc -3'
miRNA:   3'- uGGCU--------AGCAGGCUGaGGUGUgGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 81419 0.67 0.85609
Target:  5'- aGCUGcUCGcCCGGCUucgagaCCGCGCCUGUg -3'
miRNA:   3'- -UGGCuAGCaGGCUGA------GGUGUGGGCAg -5'
10882 3' -57.4 NC_002794.1 + 81705 0.68 0.840746
Target:  5'- cGCCGAccaguUCG-CCGAC-CCACACCuccucuucgaCGUCc -3'
miRNA:   3'- -UGGCU-----AGCaGGCUGaGGUGUGG----------GCAG- -5'
10882 3' -57.4 NC_002794.1 + 82926 0.78 0.328279
Target:  5'- cGCCGccGUCGccgcUCCGACUCCAgGCCCGcCg -3'
miRNA:   3'- -UGGC--UAGC----AGGCUGAGGUgUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 83872 0.66 0.909541
Target:  5'- cCCGGUCGgcgcgacggCCccgGGCUCgGCGCCCGa- -3'
miRNA:   3'- uGGCUAGCa--------GG---CUGAGgUGUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 85467 0.67 0.85609
Target:  5'- gGCCGG-CGcCCGGcCUCCG-GCCUGUCg -3'
miRNA:   3'- -UGGCUaGCaGGCU-GAGGUgUGGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.