Results 61 - 80 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 90576 | 0.66 | 0.926047 |
Target: 5'- gGCgGGUC--CCGggcGCUCCAguCCCGUCg -3' miRNA: 3'- -UGgCUAGcaGGC---UGAGGUguGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 91639 | 0.68 | 0.832806 |
Target: 5'- cGCCGccUGUCCGAgCUgaagCUGCACCUGUCg -3' miRNA: 3'- -UGGCuaGCAGGCU-GA----GGUGUGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 92045 | 0.66 | 0.920767 |
Target: 5'- cGCCGugaaccugUGUCCGGCgugCCGCGgCCGg- -3' miRNA: 3'- -UGGCua------GCAGGCUGa--GGUGUgGGCag -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 99859 | 0.71 | 0.697553 |
Target: 5'- gGCCGAgaccgucgugUCGgCCGACUCCAaggagcugaucCACCCGg- -3' miRNA: 3'- -UGGCU----------AGCaGGCUGAGGU-----------GUGGGCag -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 101361 | 0.69 | 0.78185 |
Target: 5'- gGCCG--UGUUCGACUUCGCcagucuguACCCGUCc -3' miRNA: 3'- -UGGCuaGCAGGCUGAGGUG--------UGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 102300 | 0.71 | 0.687822 |
Target: 5'- gGCCgGGUC-UUCGGCUCCgacGCGCUCGUCa -3' miRNA: 3'- -UGG-CUAGcAGGCUGAGG---UGUGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 107269 | 0.66 | 0.915264 |
Target: 5'- aGCCGcgcCGUCCGcCgccgUCGC-CCCGUCg -3' miRNA: 3'- -UGGCua-GCAGGCuGa---GGUGuGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 111640 | 0.8 | 0.239119 |
Target: 5'- cGCCGGUCGggcgCCGcggccGCggCCACGCCCGUCg -3' miRNA: 3'- -UGGCUAGCa---GGC-----UGa-GGUGUGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 116687 | 0.67 | 0.877679 |
Target: 5'- gUCGAUcCGggagCCGGcCUCCAgCACCgCGUCg -3' miRNA: 3'- uGGCUA-GCa---GGCU-GAGGU-GUGG-GCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 117563 | 0.69 | 0.78185 |
Target: 5'- aGCCGGUCGUgCag--CC-CGCCCGUCg -3' miRNA: 3'- -UGGCUAGCAgGcugaGGuGUGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 118280 | 0.66 | 0.909541 |
Target: 5'- cGCCGG-CGUCgGGgaCCGCGCCgggcgCGUCg -3' miRNA: 3'- -UGGCUaGCAGgCUgaGGUGUGG-----GCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 119587 | 0.68 | 0.832806 |
Target: 5'- cGCCGAaCGUCCGucgcagucGCUCCAgCGCCuCGa- -3' miRNA: 3'- -UGGCUaGCAGGC--------UGAGGU-GUGG-GCag -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 122152 | 0.66 | 0.903598 |
Target: 5'- cGCCGGccgUGUCCGACUaCCugGCCg--- -3' miRNA: 3'- -UGGCUa--GCAGGCUGA-GGugUGGgcag -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 123263 | 0.66 | 0.920767 |
Target: 5'- cGCCGGcUgGUCCGGg-CCGCGgUCGUCg -3' miRNA: 3'- -UGGCU-AgCAGGCUgaGGUGUgGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 124319 | 0.66 | 0.915264 |
Target: 5'- cCCGGUCGaUCGAC-CCGCgACCCacGUCc -3' miRNA: 3'- uGGCUAGCaGGCUGaGGUG-UGGG--CAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 126093 | 0.68 | 0.832003 |
Target: 5'- gGCCGAcCGacuggcuUCCGGCccugggcgCCGCGCUCGUCu -3' miRNA: 3'- -UGGCUaGC-------AGGCUGa-------GGUGUGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 128849 | 0.67 | 0.877679 |
Target: 5'- cGCCGG-CGUCgaCGACgCCGCugCCGcCg -3' miRNA: 3'- -UGGCUaGCAG--GCUGaGGUGugGGCaG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 131152 | 0.66 | 0.903598 |
Target: 5'- uCCGGUCGcacgCCaGCaCgGCGCCCGUCu -3' miRNA: 3'- uGGCUAGCa---GGcUGaGgUGUGGGCAG- -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 131285 | 0.7 | 0.754581 |
Target: 5'- cGCCGG-CG-CCGucGCUCCGcCGCCCGUg -3' miRNA: 3'- -UGGCUaGCaGGC--UGAGGU-GUGGGCAg -5' |
|||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 131369 | 0.71 | 0.658402 |
Target: 5'- cACCGcuUCGcCCGugguCggcgCCGCGCCCGUCa -3' miRNA: 3'- -UGGCu-AGCaGGCu---Ga---GGUGUGGGCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home