miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 133896 0.71 0.701431
Target:  5'- gGCUGcGUCGUCUggauucggucuacgaGACggcggCCGCGCCCGUCc -3'
miRNA:   3'- -UGGC-UAGCAGG---------------CUGa----GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 134820 0.67 0.863482
Target:  5'- cGCCGAUCgGUCCagcgacagcGACgaagaaCCGgGCCCGUUg -3'
miRNA:   3'- -UGGCUAG-CAGG---------CUGa-----GGUgUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 137398 0.66 0.897437
Target:  5'- uCCGGUCuGUCCGGCgUCCGCggACgCCG-Cg -3'
miRNA:   3'- uGGCUAG-CAGGCUG-AGGUG--UG-GGCaG- -5'
10882 3' -57.4 NC_002794.1 + 144033 0.67 0.877679
Target:  5'- aGCCGuAUC-UCCGGCgCCugGCcgCCGUCg -3'
miRNA:   3'- -UGGC-UAGcAGGCUGaGGugUG--GGCAG- -5'
10882 3' -57.4 NC_002794.1 + 145830 0.66 0.897437
Target:  5'- aGCCGAgcgCGU-CGACggucgCCACGCUCGa- -3'
miRNA:   3'- -UGGCUa--GCAgGCUGa----GGUGUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 146021 0.66 0.903598
Target:  5'- cGCCGucccaGUCCGcucgauCUCCGgGaCCCGUCg -3'
miRNA:   3'- -UGGCuag--CAGGCu-----GAGGUgU-GGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 146405 0.7 0.716854
Target:  5'- uCCGAUCGUCCG-C-CCGCACCa--- -3'
miRNA:   3'- uGGCUAGCAGGCuGaGGUGUGGgcag -5'
10882 3' -57.4 NC_002794.1 + 150606 0.67 0.863482
Target:  5'- gGCCGggCG-CCGGCUCUGCgggaGCUCGUg -3'
miRNA:   3'- -UGGCuaGCaGGCUGAGGUG----UGGGCAg -5'
10882 3' -57.4 NC_002794.1 + 150782 0.67 0.863482
Target:  5'- gUCGGgcUCGUgCGACUCCAgGCCCc-- -3'
miRNA:   3'- uGGCU--AGCAgGCUGAGGUgUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 151917 0.67 0.863482
Target:  5'- gGCCGAgcucCGUCUGcggcgcaagcGCUCCGcCGCCCG-Cg -3'
miRNA:   3'- -UGGCUa---GCAGGC----------UGAGGU-GUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 152214 0.67 0.85609
Target:  5'- cCCGGaggCGUCgGACgUCgCGCGCCaCGUCg -3'
miRNA:   3'- uGGCUa--GCAGgCUG-AG-GUGUGG-GCAG- -5'
10882 3' -57.4 NC_002794.1 + 156204 0.8 0.258729
Target:  5'- cGCCGGUCGgagggCCGgcgacuccgccggcgGCUCCGCGCUCGUCg -3'
miRNA:   3'- -UGGCUAGCa----GGC---------------UGAGGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 156717 0.73 0.560134
Target:  5'- cACCGAUCGgUCGuuCUCCGCGgCUCGUCg -3'
miRNA:   3'- -UGGCUAGCaGGCu-GAGGUGU-GGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 178549 0.72 0.618934
Target:  5'- uGCCGAUCGggcaccaCGuCUUCACGCCgGUCu -3'
miRNA:   3'- -UGGCUAGCag-----GCuGAGGUGUGGgCAG- -5'
10882 3' -57.4 NC_002794.1 + 179107 0.68 0.832806
Target:  5'- uCCGGUCGUCCGcGgUCCggGCGCgCgGUCg -3'
miRNA:   3'- uGGCUAGCAGGC-UgAGG--UGUG-GgCAG- -5'
10882 3' -57.4 NC_002794.1 + 180026 0.73 0.550463
Target:  5'- gGCCGcggcCGUCCGAC-CCGCAUCaCGUCc -3'
miRNA:   3'- -UGGCua--GCAGGCUGaGGUGUGG-GCAG- -5'
10882 3' -57.4 NC_002794.1 + 183610 0.66 0.903598
Target:  5'- gGCCGcgCGcggCCGGCgcccCCGCGCCCc-- -3'
miRNA:   3'- -UGGCuaGCa--GGCUGa---GGUGUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 183982 0.68 0.840746
Target:  5'- cACCG--CGUCCGcCaCCGCGCCCGcCa -3'
miRNA:   3'- -UGGCuaGCAGGCuGaGGUGUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 185309 0.71 0.697553
Target:  5'- cCCGGUCGccccagugUCGcCUCCACACCCG-Cg -3'
miRNA:   3'- uGGCUAGCa-------GGCuGAGGUGUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 186002 0.68 0.848509
Target:  5'- cGCCGggC-UCCGccGCUCCGgGCCCGg- -3'
miRNA:   3'- -UGGCuaGcAGGC--UGAGGUgUGGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.