miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 194722 0.68 0.832806
Target:  5'- aGCCGccgCGUCaCGaACUCCACGCaCCGc- -3'
miRNA:   3'- -UGGCua-GCAG-GC-UGAGGUGUG-GGCag -5'
10882 3' -57.4 NC_002794.1 + 193785 0.73 0.579611
Target:  5'- cGCuCGAUCGcCCGACgacgCCGgCGCCCGcUCg -3'
miRNA:   3'- -UG-GCUAGCaGGCUGa---GGU-GUGGGC-AG- -5'
10882 3' -57.4 NC_002794.1 + 193698 0.67 0.891061
Target:  5'- uCCGA--GUCCGAUUCCcccuCGCCCGcCc -3'
miRNA:   3'- uGGCUagCAGGCUGAGGu---GUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 193390 0.71 0.66529
Target:  5'- cGCCG-UCGUCCGccucgcgcucgcCUCCGCcgccgccGCCCGUCg -3'
miRNA:   3'- -UGGCuAGCAGGCu-----------GAGGUG-------UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 193290 0.69 0.78185
Target:  5'- cGCCGGUagucgcCGUCCG-CUCCGCgccgcacgcagcGCCCGaUCg -3'
miRNA:   3'- -UGGCUA------GCAGGCuGAGGUG------------UGGGC-AG- -5'
10882 3' -57.4 NC_002794.1 + 192477 0.66 0.926047
Target:  5'- cGCCGAgcccUCGUCCGcCUcgucCCACGgCCG-Cg -3'
miRNA:   3'- -UGGCU----AGCAGGCuGA----GGUGUgGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 191432 0.67 0.87068
Target:  5'- cCCGG--GUCCGGCUCuCACACCgGa- -3'
miRNA:   3'- uGGCUagCAGGCUGAG-GUGUGGgCag -5'
10882 3' -57.4 NC_002794.1 + 190530 0.71 0.658402
Target:  5'- uGCCGAUCGUCguccaccagCGG-UCCGCGUCCGUCg -3'
miRNA:   3'- -UGGCUAGCAG---------GCUgAGGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 190233 0.72 0.613015
Target:  5'- uCCGGUCGUccaugugcggacagcCCGACUCCGCuuCCaGUCg -3'
miRNA:   3'- uGGCUAGCA---------------GGCUGAGGUGugGG-CAG- -5'
10882 3' -57.4 NC_002794.1 + 189990 0.75 0.431096
Target:  5'- -aCGGUcCGUCCGGgUCCAUcgGCCCGUCc -3'
miRNA:   3'- ugGCUA-GCAGGCUgAGGUG--UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 188334 0.67 0.87068
Target:  5'- cGCCGc-CG-CCGGCggcgccgUCGCGCCCGUCc -3'
miRNA:   3'- -UGGCuaGCaGGCUGa------GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 188295 0.66 0.926047
Target:  5'- cGCCGcgCGcCgGAC-CCG-GCCCGUCg -3'
miRNA:   3'- -UGGCuaGCaGgCUGaGGUgUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 186305 0.7 0.735885
Target:  5'- gGCCGGUCG-CCG-CggCGCGCUCGUCc -3'
miRNA:   3'- -UGGCUAGCaGGCuGagGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 186002 0.68 0.848509
Target:  5'- cGCCGggC-UCCGccGCUCCGgGCCCGg- -3'
miRNA:   3'- -UGGCuaGcAGGC--UGAGGUgUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 185309 0.71 0.697553
Target:  5'- cCCGGUCGccccagugUCGcCUCCACACCCG-Cg -3'
miRNA:   3'- uGGCUAGCa-------GGCuGAGGUGUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 183982 0.68 0.840746
Target:  5'- cACCG--CGUCCGcCaCCGCGCCCGcCa -3'
miRNA:   3'- -UGGCuaGCAGGCuGaGGUGUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 183610 0.66 0.903598
Target:  5'- gGCCGcgCGcggCCGGCgcccCCGCGCCCc-- -3'
miRNA:   3'- -UGGCuaGCa--GGCUGa---GGUGUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 180026 0.73 0.550463
Target:  5'- gGCCGcggcCGUCCGAC-CCGCAUCaCGUCc -3'
miRNA:   3'- -UGGCua--GCAGGCUGaGGUGUGG-GCAG- -5'
10882 3' -57.4 NC_002794.1 + 179107 0.68 0.832806
Target:  5'- uCCGGUCGUCCGcGgUCCggGCGCgCgGUCg -3'
miRNA:   3'- uGGCUAGCAGGC-UgAGG--UGUG-GgCAG- -5'
10882 3' -57.4 NC_002794.1 + 178549 0.72 0.618934
Target:  5'- uGCCGAUCGggcaccaCGuCUUCACGCCgGUCu -3'
miRNA:   3'- -UGGCUAGCag-----GCuGAGGUGUGGgCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.