miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 156717 0.73 0.560134
Target:  5'- cACCGAUCGgUCGuuCUCCGCGgCUCGUCg -3'
miRNA:   3'- -UGGCUAGCaGGCu-GAGGUGU-GGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 156204 0.8 0.258729
Target:  5'- cGCCGGUCGgagggCCGgcgacuccgccggcgGCUCCGCGCUCGUCg -3'
miRNA:   3'- -UGGCUAGCa----GGC---------------UGAGGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 152214 0.67 0.85609
Target:  5'- cCCGGaggCGUCgGACgUCgCGCGCCaCGUCg -3'
miRNA:   3'- uGGCUa--GCAGgCUG-AG-GUGUGG-GCAG- -5'
10882 3' -57.4 NC_002794.1 + 151917 0.67 0.863482
Target:  5'- gGCCGAgcucCGUCUGcggcgcaagcGCUCCGcCGCCCG-Cg -3'
miRNA:   3'- -UGGCUa---GCAGGC----------UGAGGU-GUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 150782 0.67 0.863482
Target:  5'- gUCGGgcUCGUgCGACUCCAgGCCCc-- -3'
miRNA:   3'- uGGCU--AGCAgGCUGAGGUgUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 150606 0.67 0.863482
Target:  5'- gGCCGggCG-CCGGCUCUGCgggaGCUCGUg -3'
miRNA:   3'- -UGGCuaGCaGGCUGAGGUG----UGGGCAg -5'
10882 3' -57.4 NC_002794.1 + 146405 0.7 0.716854
Target:  5'- uCCGAUCGUCCG-C-CCGCACCa--- -3'
miRNA:   3'- uGGCUAGCAGGCuGaGGUGUGGgcag -5'
10882 3' -57.4 NC_002794.1 + 146021 0.66 0.903598
Target:  5'- cGCCGucccaGUCCGcucgauCUCCGgGaCCCGUCg -3'
miRNA:   3'- -UGGCuag--CAGGCu-----GAGGUgU-GGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 145830 0.66 0.897437
Target:  5'- aGCCGAgcgCGU-CGACggucgCCACGCUCGa- -3'
miRNA:   3'- -UGGCUa--GCAgGCUGa----GGUGUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 144033 0.67 0.877679
Target:  5'- aGCCGuAUC-UCCGGCgCCugGCcgCCGUCg -3'
miRNA:   3'- -UGGC-UAGcAGGCUGaGGugUG--GGCAG- -5'
10882 3' -57.4 NC_002794.1 + 137398 0.66 0.897437
Target:  5'- uCCGGUCuGUCCGGCgUCCGCggACgCCG-Cg -3'
miRNA:   3'- uGGCUAG-CAGGCUG-AGGUG--UG-GGCaG- -5'
10882 3' -57.4 NC_002794.1 + 134820 0.67 0.863482
Target:  5'- cGCCGAUCgGUCCagcgacagcGACgaagaaCCGgGCCCGUUg -3'
miRNA:   3'- -UGGCUAG-CAGG---------CUGa-----GGUgUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 133896 0.71 0.701431
Target:  5'- gGCUGcGUCGUCUggauucggucuacgaGACggcggCCGCGCCCGUCc -3'
miRNA:   3'- -UGGC-UAGCAGG---------------CUGa----GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 131369 0.71 0.658402
Target:  5'- cACCGcuUCGcCCGugguCggcgCCGCGCCCGUCa -3'
miRNA:   3'- -UGGCu-AGCaGGCu---Ga---GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 131285 0.7 0.754581
Target:  5'- cGCCGG-CG-CCGucGCUCCGcCGCCCGUg -3'
miRNA:   3'- -UGGCUaGCaGGC--UGAGGU-GUGGGCAg -5'
10882 3' -57.4 NC_002794.1 + 131152 0.66 0.903598
Target:  5'- uCCGGUCGcacgCCaGCaCgGCGCCCGUCu -3'
miRNA:   3'- uGGCUAGCa---GGcUGaGgUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 128849 0.67 0.877679
Target:  5'- cGCCGG-CGUCgaCGACgCCGCugCCGcCg -3'
miRNA:   3'- -UGGCUaGCAG--GCUGaGGUGugGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 126093 0.68 0.832003
Target:  5'- gGCCGAcCGacuggcuUCCGGCccugggcgCCGCGCUCGUCu -3'
miRNA:   3'- -UGGCUaGC-------AGGCUGa-------GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 124319 0.66 0.915264
Target:  5'- cCCGGUCGaUCGAC-CCGCgACCCacGUCc -3'
miRNA:   3'- uGGCUAGCaGGCUGaGGUG-UGGG--CAG- -5'
10882 3' -57.4 NC_002794.1 + 123263 0.66 0.920767
Target:  5'- cGCCGGcUgGUCCGGg-CCGCGgUCGUCg -3'
miRNA:   3'- -UGGCU-AgCAGGCUgaGGUGUgGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.