miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 122152 0.66 0.903598
Target:  5'- cGCCGGccgUGUCCGACUaCCugGCCg--- -3'
miRNA:   3'- -UGGCUa--GCAGGCUGA-GGugUGGgcag -5'
10882 3' -57.4 NC_002794.1 + 119587 0.68 0.832806
Target:  5'- cGCCGAaCGUCCGucgcagucGCUCCAgCGCCuCGa- -3'
miRNA:   3'- -UGGCUaGCAGGC--------UGAGGU-GUGG-GCag -5'
10882 3' -57.4 NC_002794.1 + 118280 0.66 0.909541
Target:  5'- cGCCGG-CGUCgGGgaCCGCGCCgggcgCGUCg -3'
miRNA:   3'- -UGGCUaGCAGgCUgaGGUGUGG-----GCAG- -5'
10882 3' -57.4 NC_002794.1 + 117563 0.69 0.78185
Target:  5'- aGCCGGUCGUgCag--CC-CGCCCGUCg -3'
miRNA:   3'- -UGGCUAGCAgGcugaGGuGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 116687 0.67 0.877679
Target:  5'- gUCGAUcCGggagCCGGcCUCCAgCACCgCGUCg -3'
miRNA:   3'- uGGCUA-GCa---GGCU-GAGGU-GUGG-GCAG- -5'
10882 3' -57.4 NC_002794.1 + 111640 0.8 0.239119
Target:  5'- cGCCGGUCGggcgCCGcggccGCggCCACGCCCGUCg -3'
miRNA:   3'- -UGGCUAGCa---GGC-----UGa-GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 107269 0.66 0.915264
Target:  5'- aGCCGcgcCGUCCGcCgccgUCGC-CCCGUCg -3'
miRNA:   3'- -UGGCua-GCAGGCuGa---GGUGuGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 102300 0.71 0.687822
Target:  5'- gGCCgGGUC-UUCGGCUCCgacGCGCUCGUCa -3'
miRNA:   3'- -UGG-CUAGcAGGCUGAGG---UGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 101361 0.69 0.78185
Target:  5'- gGCCG--UGUUCGACUUCGCcagucuguACCCGUCc -3'
miRNA:   3'- -UGGCuaGCAGGCUGAGGUG--------UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 99859 0.71 0.697553
Target:  5'- gGCCGAgaccgucgugUCGgCCGACUCCAaggagcugaucCACCCGg- -3'
miRNA:   3'- -UGGCU----------AGCaGGCUGAGGU-----------GUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 92045 0.66 0.920767
Target:  5'- cGCCGugaaccugUGUCCGGCgugCCGCGgCCGg- -3'
miRNA:   3'- -UGGCua------GCAGGCUGa--GGUGUgGGCag -5'
10882 3' -57.4 NC_002794.1 + 91639 0.68 0.832806
Target:  5'- cGCCGccUGUCCGAgCUgaagCUGCACCUGUCg -3'
miRNA:   3'- -UGGCuaGCAGGCU-GA----GGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 90576 0.66 0.926047
Target:  5'- gGCgGGUC--CCGggcGCUCCAguCCCGUCg -3'
miRNA:   3'- -UGgCUAGcaGGC---UGAGGUguGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 85467 0.67 0.85609
Target:  5'- gGCCGG-CGcCCGGcCUCCG-GCCUGUCg -3'
miRNA:   3'- -UGGCUaGCaGGCU-GAGGUgUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 83872 0.66 0.909541
Target:  5'- cCCGGUCGgcgcgacggCCccgGGCUCgGCGCCCGa- -3'
miRNA:   3'- uGGCUAGCa--------GG---CUGAGgUGUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 82926 0.78 0.328279
Target:  5'- cGCCGccGUCGccgcUCCGACUCCAgGCCCGcCg -3'
miRNA:   3'- -UGGC--UAGC----AGGCUGAGGUgUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 81705 0.68 0.840746
Target:  5'- cGCCGAccaguUCG-CCGAC-CCACACCuccucuucgaCGUCc -3'
miRNA:   3'- -UGGCU-----AGCaGGCUGaGGUGUGG----------GCAG- -5'
10882 3' -57.4 NC_002794.1 + 81419 0.67 0.85609
Target:  5'- aGCUGcUCGcCCGGCUucgagaCCGCGCCUGUg -3'
miRNA:   3'- -UGGCuAGCaGGCUGA------GGUGUGGGCAg -5'
10882 3' -57.4 NC_002794.1 + 80995 0.67 0.877679
Target:  5'- uCCGGucuggucaUCGUCCGACcCCGCA-UCGUCc -3'
miRNA:   3'- uGGCU--------AGCAGGCUGaGGUGUgGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 80890 0.67 0.881781
Target:  5'- cCCGAUCccCCGGCggcccucgacgacCCGCGCCCGcUCg -3'
miRNA:   3'- uGGCUAGcaGGCUGa------------GGUGUGGGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.