miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 3' -57.4 NC_002794.1 + 52799 0.67 0.877679
Target:  5'- aGCCGcUCGUCgGACgCCGgcaGCUCGUCc -3'
miRNA:   3'- -UGGCuAGCAGgCUGaGGUg--UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 50886 0.68 0.806291
Target:  5'- aGCUGGUCGaacacgaacccgCCGACUCCAgCugCCGg- -3'
miRNA:   3'- -UGGCUAGCa-----------GGCUGAGGU-GugGGCag -5'
10882 3' -57.4 NC_002794.1 + 48542 0.68 0.832806
Target:  5'- uCgGGUCGgCCGACcacUCCGCcggccGCCCGUCc -3'
miRNA:   3'- uGgCUAGCaGGCUG---AGGUG-----UGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 44683 0.66 0.909541
Target:  5'- cGCC-AUCGUCCaGAC-CCACcgccGCCCGg- -3'
miRNA:   3'- -UGGcUAGCAGG-CUGaGGUG----UGGGCag -5'
10882 3' -57.4 NC_002794.1 + 44541 0.71 0.658402
Target:  5'- cGCCGucGUCGUcgCCGGCggCgGCGCCCGUUg -3'
miRNA:   3'- -UGGC--UAGCA--GGCUGa-GgUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 44375 0.68 0.832806
Target:  5'- gGCgCGA-CGUCCGcgacGCUCgaCGCGCCCGUUc -3'
miRNA:   3'- -UG-GCUaGCAGGC----UGAG--GUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 44208 0.68 0.840746
Target:  5'- gGCCGA-CGUCCGGCUCgGgCGCCg--- -3'
miRNA:   3'- -UGGCUaGCAGGCUGAGgU-GUGGgcag -5'
10882 3' -57.4 NC_002794.1 + 44017 0.67 0.889761
Target:  5'- gGCCGG-CGUCCGcagaccgucgcuCUCCGCcCCCGg- -3'
miRNA:   3'- -UGGCUaGCAGGCu-----------GAGGUGuGGGCag -5'
10882 3' -57.4 NC_002794.1 + 43783 0.66 0.914702
Target:  5'- cGCCGAacgccccgCGUCCGacccgccGCUCCGgGCCCa-- -3'
miRNA:   3'- -UGGCUa-------GCAGGC-------UGAGGUgUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 40611 0.77 0.365588
Target:  5'- cGCCGG-CGUCCGACUCCGCGgagUCCG-Cg -3'
miRNA:   3'- -UGGCUaGCAGGCUGAGGUGU---GGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 38506 0.71 0.668238
Target:  5'- cGCCGGUCGccgCCGcCUCCGCGauCCCagGUCg -3'
miRNA:   3'- -UGGCUAGCa--GGCuGAGGUGU--GGG--CAG- -5'
10882 3' -57.4 NC_002794.1 + 32693 0.66 0.903598
Target:  5'- uCCGGaggCGUCgcgggCGACUcgCCGcCACCCGUCg -3'
miRNA:   3'- uGGCUa--GCAG-----GCUGA--GGU-GUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 31385 0.67 0.884474
Target:  5'- cCCG-UCGUCggCGGCcccgCCGCGCCCGcCg -3'
miRNA:   3'- uGGCuAGCAG--GCUGa---GGUGUGGGCaG- -5'
10882 3' -57.4 NC_002794.1 + 30100 0.68 0.824696
Target:  5'- gGCCGGUC--CCGAC-CCAcCGCCCGg- -3'
miRNA:   3'- -UGGCUAGcaGGCUGaGGU-GUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 29860 0.66 0.926047
Target:  5'- gAUCGAggaaUCGUCCcGCUCC-CACCCc-- -3'
miRNA:   3'- -UGGCU----AGCAGGcUGAGGuGUGGGcag -5'
10882 3' -57.4 NC_002794.1 + 29202 0.67 0.884474
Target:  5'- uCCGucCGUCCGGCggUCgGCGgCCGUCg -3'
miRNA:   3'- uGGCuaGCAGGCUG--AGgUGUgGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 28722 0.7 0.735885
Target:  5'- cGCCGc-CGUCCGACcgugUCCccgAgGCCCGUCg -3'
miRNA:   3'- -UGGCuaGCAGGCUG----AGG---UgUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 24142 0.71 0.687822
Target:  5'- -gCGAccUC-UCCGACUCCugGCCCGa- -3'
miRNA:   3'- ugGCU--AGcAGGCUGAGGugUGGGCag -5'
10882 3' -57.4 NC_002794.1 + 24114 1.08 0.003723
Target:  5'- gACCGAUCGUCCGACUCCACACCCGUCc -3'
miRNA:   3'- -UGGCUAGCAGGCUGAGGUGUGGGCAG- -5'
10882 3' -57.4 NC_002794.1 + 23590 0.66 0.903598
Target:  5'- cGCCGAUCcaCCGA-UCCGCcgACCCGa- -3'
miRNA:   3'- -UGGCUAGcaGGCUgAGGUG--UGGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.