Results 101 - 113 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 18969 | 0.67 | 0.891061 |
Target: 5'- cACCucAUCGaCCGGCUCaacgugaGCGCCUGUCc -3' miRNA: 3'- -UGGc-UAGCaGGCUGAGg------UGUGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 44017 | 0.67 | 0.889761 |
Target: 5'- gGCCGG-CGUCCGcagaccgucgcuCUCCGCcCCCGg- -3' miRNA: 3'- -UGGCUaGCAGGCu-----------GAGGUGuGGGCag -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 59127 | 0.67 | 0.884474 |
Target: 5'- cACCGAgg--CCGACUUCGCgcaggGCCgCGUCg -3' miRNA: 3'- -UGGCUagcaGGCUGAGGUG-----UGG-GCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 128849 | 0.67 | 0.877679 |
Target: 5'- cGCCGG-CGUCgaCGACgCCGCugCCGcCg -3' miRNA: 3'- -UGGCUaGCAG--GCUGaGGUGugGGCaG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 80890 | 0.67 | 0.881781 |
Target: 5'- cCCGAUCccCCGGCggcccucgacgacCCGCGCCCGcUCg -3' miRNA: 3'- uGGCUAGcaGGCUGa------------GGUGUGGGC-AG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 29202 | 0.67 | 0.884474 |
Target: 5'- uCCGucCGUCCGGCggUCgGCGgCCGUCg -3' miRNA: 3'- uGGCuaGCAGGCUG--AGgUGUgGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 31385 | 0.67 | 0.884474 |
Target: 5'- cCCG-UCGUCggCGGCcccgCCGCGCCCGcCg -3' miRNA: 3'- uGGCuAGCAG--GCUGa---GGUGUGGGCaG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 52799 | 0.67 | 0.877679 |
Target: 5'- aGCCGcUCGUCgGACgCCGgcaGCUCGUCc -3' miRNA: 3'- -UGGCuAGCAGgCUGaGGUg--UGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 144033 | 0.67 | 0.877679 |
Target: 5'- aGCCGuAUC-UCCGGCgCCugGCcgCCGUCg -3' miRNA: 3'- -UGGC-UAGcAGGCUGaGGugUG--GGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 116687 | 0.67 | 0.877679 |
Target: 5'- gUCGAUcCGggagCCGGcCUCCAgCACCgCGUCg -3' miRNA: 3'- uGGCUA-GCa---GGCU-GAGGU-GUGG-GCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 80995 | 0.67 | 0.877679 |
Target: 5'- uCCGGucuggucaUCGUCCGACcCCGCA-UCGUCc -3' miRNA: 3'- uGGCU--------AGCAGGCUGaGGUGUgGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 67841 | 0.67 | 0.87068 |
Target: 5'- cGCCG-UCGcCCGGCgCCGcCGCgCGUCa -3' miRNA: 3'- -UGGCuAGCaGGCUGaGGU-GUGgGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 16431 | 0.68 | 0.848509 |
Target: 5'- cCCGA-CG-CCGAgUCCGCGCuuGUUc -3' miRNA: 3'- uGGCUaGCaGGCUgAGGUGUGggCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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