Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10882 | 3' | -57.4 | NC_002794.1 | + | 58015 | 0.66 | 0.920767 |
Target: 5'- cGCCGGggcCGccgCCGGCgaacccgCCGCgccGCCCGUCc -3' miRNA: 3'- -UGGCUa--GCa--GGCUGa------GGUG---UGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 123263 | 0.66 | 0.920767 |
Target: 5'- cGCCGGcUgGUCCGGg-CCGCGgUCGUCg -3' miRNA: 3'- -UGGCU-AgCAGGCUgaGGUGUgGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 90576 | 0.66 | 0.926047 |
Target: 5'- gGCgGGUC--CCGggcGCUCCAguCCCGUCg -3' miRNA: 3'- -UGgCUAGcaGGC---UGAGGUguGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 29860 | 0.66 | 0.926047 |
Target: 5'- gAUCGAggaaUCGUCCcGCUCC-CACCCc-- -3' miRNA: 3'- -UGGCU----AGCAGGcUGAGGuGUGGGcag -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 188295 | 0.66 | 0.926047 |
Target: 5'- cGCCGcgCGcCgGAC-CCG-GCCCGUCg -3' miRNA: 3'- -UGGCuaGCaGgCUGaGGUgUGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 19244 | 0.66 | 0.909541 |
Target: 5'- aGCCGAUgaUGUgCCGACcggCCGCGgccCCCGUg -3' miRNA: 3'- -UGGCUA--GCA-GGCUGa--GGUGU---GGGCAg -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 53736 | 0.66 | 0.909541 |
Target: 5'- cGCC-AUCG-CCGGCcgCCGCugCCGcCg -3' miRNA: 3'- -UGGcUAGCaGGCUGa-GGUGugGGCaG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 55009 | 0.67 | 0.891061 |
Target: 5'- cGCCGggCGUCCGcCgCCGCGCCg--- -3' miRNA: 3'- -UGGCuaGCAGGCuGaGGUGUGGgcag -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 193698 | 0.67 | 0.891061 |
Target: 5'- uCCGA--GUCCGAUUCCcccuCGCCCGcCc -3' miRNA: 3'- uGGCUagCAGGCUGAGGu---GUGGGCaG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 137398 | 0.66 | 0.897437 |
Target: 5'- uCCGGUCuGUCCGGCgUCCGCggACgCCG-Cg -3' miRNA: 3'- uGGCUAG-CAGGCUG-AGGUG--UG-GGCaG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 67888 | 0.66 | 0.897437 |
Target: 5'- uCCGAg---CgGACUCCcccuCGCCCGUCu -3' miRNA: 3'- uGGCUagcaGgCUGAGGu---GUGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 183610 | 0.66 | 0.903598 |
Target: 5'- gGCCGcgCGcggCCGGCgcccCCGCGCCCc-- -3' miRNA: 3'- -UGGCuaGCa--GGCUGa---GGUGUGGGcag -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 32693 | 0.66 | 0.903598 |
Target: 5'- uCCGGaggCGUCgcgggCGACUcgCCGcCACCCGUCg -3' miRNA: 3'- uGGCUa--GCAG-----GCUGA--GGU-GUGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 145830 | 0.66 | 0.897437 |
Target: 5'- aGCCGAgcgCGU-CGACggucgCCACGCUCGa- -3' miRNA: 3'- -UGGCUa--GCAgGCUGa----GGUGUGGGCag -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 17546 | 0.66 | 0.903598 |
Target: 5'- aGCCGAUCGaggaagcggugUCCgGACUCCAaacCGCaCCGg- -3' miRNA: 3'- -UGGCUAGC-----------AGG-CUGAGGU---GUG-GGCag -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 23590 | 0.66 | 0.903598 |
Target: 5'- cGCCGAUCcaCCGA-UCCGCcgACCCGa- -3' miRNA: 3'- -UGGCUAGcaGGCUgAGGUG--UGGGCag -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 131152 | 0.66 | 0.903598 |
Target: 5'- uCCGGUCGcacgCCaGCaCgGCGCCCGUCu -3' miRNA: 3'- uGGCUAGCa---GGcUGaGgUGUGGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 146021 | 0.66 | 0.903598 |
Target: 5'- cGCCGucccaGUCCGcucgauCUCCGgGaCCCGUCg -3' miRNA: 3'- -UGGCuag--CAGGCu-----GAGGUgU-GGGCAG- -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 44683 | 0.66 | 0.909541 |
Target: 5'- cGCC-AUCGUCCaGAC-CCACcgccGCCCGg- -3' miRNA: 3'- -UGGcUAGCAGG-CUGaGGUG----UGGGCag -5' |
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10882 | 3' | -57.4 | NC_002794.1 | + | 122152 | 0.66 | 0.903598 |
Target: 5'- cGCCGGccgUGUCCGACUaCCugGCCg--- -3' miRNA: 3'- -UGGCUa--GCAGGCUGA-GGugUGGgcag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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