miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 5' -55.4 NC_002794.1 + 34972 0.66 0.960995
Target:  5'- cCCGuC-CCUGGCCaCGAAacugcGCCGGcUGc -3'
miRNA:   3'- -GGCuGaGGACCGG-GCUU-----UGGCCuAUu -5'
10882 5' -55.4 NC_002794.1 + 134682 0.66 0.957419
Target:  5'- gCGGCcgcgCUUGGCUCGAccgccucugggGGCCGGAg-- -3'
miRNA:   3'- gGCUGa---GGACCGGGCU-----------UUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 17442 0.66 0.957419
Target:  5'- gCCGGCgCUcgGGCCCGcGACCGaGGUc- -3'
miRNA:   3'- -GGCUGaGGa-CCGGGCuUUGGC-CUAuu -5'
10882 5' -55.4 NC_002794.1 + 191972 0.66 0.957419
Target:  5'- aCGGCUCCUccgacGGCuccuCCGAcGGCCGGGa-- -3'
miRNA:   3'- gGCUGAGGA-----CCG----GGCU-UUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 42661 0.66 0.957419
Target:  5'- gCCGACggcgCCgccGGCacgggguacgCCGAGACCGGcgAGc -3'
miRNA:   3'- -GGCUGa---GGa--CCG----------GGCUUUGGCCuaUU- -5'
10882 5' -55.4 NC_002794.1 + 50906 0.66 0.957419
Target:  5'- gCCGACUCCa-GCugCCGGAGCuCGGAc-- -3'
miRNA:   3'- -GGCUGAGGacCG--GGCUUUG-GCCUauu -5'
10882 5' -55.4 NC_002794.1 + 82164 0.66 0.957419
Target:  5'- aCGGCUCCgGcGCCCGAGccauaaagcCCGGGc-- -3'
miRNA:   3'- gGCUGAGGaC-CGGGCUUu--------GGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 77974 0.66 0.953625
Target:  5'- gCCGACUCCUccGCCuCGGAACggCGGGc-- -3'
miRNA:   3'- -GGCUGAGGAc-CGG-GCUUUG--GCCUauu -5'
10882 5' -55.4 NC_002794.1 + 86553 0.66 0.953625
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUu- -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAuu -5'
10882 5' -55.4 NC_002794.1 + 50352 0.66 0.953625
Target:  5'- aCCGGCUCCgccaUGaCCgCGGAGCCGGc--- -3'
miRNA:   3'- -GGCUGAGG----ACcGG-GCUUUGGCCuauu -5'
10882 5' -55.4 NC_002794.1 + 191427 0.66 0.94961
Target:  5'- cCCGAC-CCgGGUCCGGcucucacACCGGAc-- -3'
miRNA:   3'- -GGCUGaGGaCCGGGCUu------UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 150793 0.66 0.948362
Target:  5'- gCGACUCCaGGCCCcgcggcggacggccGAGccGCUGGAg-- -3'
miRNA:   3'- gGCUGAGGaCCGGG--------------CUU--UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 43243 0.66 0.945371
Target:  5'- gCGGCaCC-GGCCgGAAcGCCGGGUGGu -3'
miRNA:   3'- gGCUGaGGaCCGGgCUU-UGGCCUAUU- -5'
10882 5' -55.4 NC_002794.1 + 18378 0.66 0.945371
Target:  5'- uUCGACUCCcGGCgCGAuGCCGa---- -3'
miRNA:   3'- -GGCUGAGGaCCGgGCUuUGGCcuauu -5'
10882 5' -55.4 NC_002794.1 + 63317 0.66 0.945371
Target:  5'- aCCGA-UCCggcggggGGCCCGAgcgcgGACCGGu--- -3'
miRNA:   3'- -GGCUgAGGa------CCGGGCU-----UUGGCCuauu -5'
10882 5' -55.4 NC_002794.1 + 16409 0.66 0.940903
Target:  5'- gUCGACUCUUGGCgUu--ACCGGAc-- -3'
miRNA:   3'- -GGCUGAGGACCGgGcuuUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 114729 0.66 0.940903
Target:  5'- gCGGCUCCgGGUUCGucGAGCCGGc--- -3'
miRNA:   3'- gGCUGAGGaCCGGGC--UUUGGCCuauu -5'
10882 5' -55.4 NC_002794.1 + 108021 0.66 0.940903
Target:  5'- aCCGGCacgugCUcGGCCUGGAAuuCCGGGUGc -3'
miRNA:   3'- -GGCUGa----GGaCCGGGCUUU--GGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 37018 0.67 0.931278
Target:  5'- gCGGCUCg-GGCCCGAuguaGACCuucaGGGUGu -3'
miRNA:   3'- gGCUGAGgaCCGGGCU----UUGG----CCUAUu -5'
10882 5' -55.4 NC_002794.1 + 142904 0.67 0.931278
Target:  5'- cCCGGCgUCCUccggGGgCCGGAGCaGGAUGu -3'
miRNA:   3'- -GGCUG-AGGA----CCgGGCUUUGgCCUAUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.