Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10882 | 5' | -55.4 | NC_002794.1 | + | 86145 | 0.68 | 0.876596 |
Target: 5'- gCCGggacggauGCUCCgGGCCaCGcccGACCGGAUGc -3' miRNA: 3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 288 | 0.68 | 0.89032 |
Target: 5'- gCGGC-CCUGGCgcgCCGAAcGCCGGGc-- -3' miRNA: 3'- gGCUGaGGACCG---GGCUU-UGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 86337 | 0.68 | 0.876596 |
Target: 5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUGc -3' miRNA: 3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 126665 | 0.68 | 0.883566 |
Target: 5'- aCCGACgggCCgcggcgagGGCCCG-AAUCGGGg-- -3' miRNA: 3'- -GGCUGa--GGa-------CCGGGCuUUGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 44216 | 0.67 | 0.920726 |
Target: 5'- uCCGGCUCg-GGCgCCGAGggcucgguGCCGGGc-- -3' miRNA: 3'- -GGCUGAGgaCCG-GGCUU--------UGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 142904 | 0.67 | 0.931278 |
Target: 5'- cCCGGCgUCCUccggGGgCCGGAGCaGGAUGu -3' miRNA: 3'- -GGCUG-AGGA----CCgGGCUUUGgCCUAUu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 153282 | 0.67 | 0.926118 |
Target: 5'- gCCGAC-CCgucGCCCGAGacgcagGCCGGGg-- -3' miRNA: 3'- -GGCUGaGGac-CGGGCUU------UGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 140407 | 0.67 | 0.920726 |
Target: 5'- uCCGACguuaUCUcgggUGGCCgCGAcguacAACCGGAUGu -3' miRNA: 3'- -GGCUG----AGG----ACCGG-GCU-----UUGGCCUAUu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 80938 | 0.67 | 0.925589 |
Target: 5'- aCCGACUUCUGcGCCUGccgcgccAAGCuCGGGUu- -3' miRNA: 3'- -GGCUGAGGAC-CGGGC-------UUUG-GCCUAuu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 135453 | 0.67 | 0.915102 |
Target: 5'- aCgGGCUCCcggGGCCCGcgGCCGa---- -3' miRNA: 3'- -GgCUGAGGa--CCGGGCuuUGGCcuauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 37018 | 0.67 | 0.931278 |
Target: 5'- gCGGCUCg-GGCCCGAuguaGACCuucaGGGUGu -3' miRNA: 3'- gGCUGAGgaCCGGGCU----UUGG----CCUAUu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 17442 | 0.66 | 0.957419 |
Target: 5'- gCCGGCgCUcgGGCCCGcGACCGaGGUc- -3' miRNA: 3'- -GGCUGaGGa-CCGGGCuUUGGC-CUAuu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 134682 | 0.66 | 0.957419 |
Target: 5'- gCGGCcgcgCUUGGCUCGAccgccucugggGGCCGGAg-- -3' miRNA: 3'- gGCUGa---GGACCGGGCU-----------UUGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 50352 | 0.66 | 0.953625 |
Target: 5'- aCCGGCUCCgccaUGaCCgCGGAGCCGGc--- -3' miRNA: 3'- -GGCUGAGG----ACcGG-GCUUUGGCCuauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 50906 | 0.66 | 0.957419 |
Target: 5'- gCCGACUCCa-GCugCCGGAGCuCGGAc-- -3' miRNA: 3'- -GGCUGAGGacCG--GGCUUUG-GCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 150793 | 0.66 | 0.948362 |
Target: 5'- gCGACUCCaGGCCCcgcggcggacggccGAGccGCUGGAg-- -3' miRNA: 3'- gGCUGAGGaCCGGG--------------CUU--UGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 18378 | 0.66 | 0.945371 |
Target: 5'- uUCGACUCCcGGCgCGAuGCCGa---- -3' miRNA: 3'- -GGCUGAGGaCCGgGCUuUGGCcuauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 43243 | 0.66 | 0.945371 |
Target: 5'- gCGGCaCC-GGCCgGAAcGCCGGGUGGu -3' miRNA: 3'- gGCUGaGGaCCGGgCUU-UGGCCUAUU- -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 16409 | 0.66 | 0.940903 |
Target: 5'- gUCGACUCUUGGCgUu--ACCGGAc-- -3' miRNA: 3'- -GGCUGAGGACCGgGcuuUGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 108021 | 0.66 | 0.940903 |
Target: 5'- aCCGGCacgugCUcGGCCUGGAAuuCCGGGUGc -3' miRNA: 3'- -GGCUGa----GGaCCGGGCUUU--GGCCUAUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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