miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 5' -55.4 NC_002794.1 + 24150 1.07 0.005754
Target:  5'- uCCGACUCCUGGCCCGAAACCGGAUAAc -3'
miRNA:   3'- -GGCUGAGGACCGGGCUUUGGCCUAUU- -5'
10882 5' -55.4 NC_002794.1 + 86289 0.76 0.493416
Target:  5'- gCCGggacggauGCUCC-GGCCCGAgcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGGGCU----UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86097 0.76 0.493416
Target:  5'- gCCGggacggauGCUCC-GGCCCGAgcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGGGCU----UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 186010 0.76 0.5029
Target:  5'- uCCGccGCUCCgGGCCCGGGcCCGGAc-- -3'
miRNA:   3'- -GGC--UGAGGaCCGGGCUUuGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 151652 0.75 0.531804
Target:  5'- gCCGGCaCUUGGCUCGccGCCGGGUGAc -3'
miRNA:   3'- -GGCUGaGGACCGGGCuuUGGCCUAUU- -5'
10882 5' -55.4 NC_002794.1 + 57399 0.73 0.671706
Target:  5'- aCCGGCUCCgGcGCCCGcguGGCCGGcGUGc -3'
miRNA:   3'- -GGCUGAGGaC-CGGGCu--UUGGCC-UAUu -5'
10882 5' -55.4 NC_002794.1 + 19281 0.72 0.681713
Target:  5'- gCGuCUCCUGGCCUGGAGCCu----- -3'
miRNA:   3'- gGCuGAGGACCGGGCUUUGGccuauu -5'
10882 5' -55.4 NC_002794.1 + 5063 0.72 0.730977
Target:  5'- uUGACUCaccgacagGGCCCGAgcgaGACCGGAg-- -3'
miRNA:   3'- gGCUGAGga------CCGGGCU----UUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 133510 0.71 0.758669
Target:  5'- uCCGACggcgaCCUGGCCguUGAguuggccGACCGGGUAc -3'
miRNA:   3'- -GGCUGa----GGACCGG--GCU-------UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 147511 0.71 0.768945
Target:  5'- aCCGAgUUCCUcGGCCUGggGCUGGu--- -3'
miRNA:   3'- -GGCU-GAGGA-CCGGGCuuUGGCCuauu -5'
10882 5' -55.4 NC_002794.1 + 141133 0.71 0.778163
Target:  5'- cCCGGCUCCgaguCgCCGAAGCCGGcgGAu -3'
miRNA:   3'- -GGCUGAGGacc-G-GGCUUUGGCCuaUU- -5'
10882 5' -55.4 NC_002794.1 + 86601 0.7 0.787255
Target:  5'- gCCGggacggauGCUCC-GGCUCGAgcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGGGCU----UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86241 0.7 0.787255
Target:  5'- gCCGggacggauGCUCC-GGCUCGAgcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGGGCU----UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86433 0.7 0.787255
Target:  5'- gCCGggacggauGCUCC-GGCUCGAgcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGGGCU----UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 87044 0.7 0.796211
Target:  5'- aCCGGCgc--GGCUCGggGCCGGGUc- -3'
miRNA:   3'- -GGCUGaggaCCGGGCuuUGGCCUAuu -5'
10882 5' -55.4 NC_002794.1 + 43667 0.7 0.805023
Target:  5'- gCCgGGCUCUcgGGCCCGGGcgcggaccauGCCGGAg-- -3'
miRNA:   3'- -GG-CUGAGGa-CCGGGCUU----------UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 115168 0.7 0.82134
Target:  5'- aCCaGCUCCUgguagacGGCCCGguGCCGGcgGu -3'
miRNA:   3'- -GGcUGAGGA-------CCGGGCuuUGGCCuaUu -5'
10882 5' -55.4 NC_002794.1 + 32582 0.69 0.838673
Target:  5'- gCGGCggugCCgGGgCCGggGCCGGGg-- -3'
miRNA:   3'- gGCUGa---GGaCCgGGCuuUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 38426 0.69 0.854433
Target:  5'- gCCGACUCCaUGGCggCG-GGCCGGAc-- -3'
miRNA:   3'- -GGCUGAGG-ACCGg-GCuUUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 113532 0.69 0.854433
Target:  5'- gCCGGCUCggcgucgccGGCCCGGAgcaggcGCCGGAc-- -3'
miRNA:   3'- -GGCUGAGga-------CCGGGCUU------UGGCCUauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.