miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 5' -55.4 NC_002794.1 + 82941 0.69 0.862024
Target:  5'- uCCGACUCCaGGCCCGccgcGCaCGGc--- -3'
miRNA:   3'- -GGCUGAGGaCCGGGCuu--UG-GCCuauu -5'
10882 5' -55.4 NC_002794.1 + 68318 0.69 0.862024
Target:  5'- gCCGACgcguUCCgcGGCCUGGuGACCGGGUu- -3'
miRNA:   3'- -GGCUG----AGGa-CCGGGCU-UUGGCCUAuu -5'
10882 5' -55.4 NC_002794.1 + 151966 0.69 0.862024
Target:  5'- cCCGgguGCUCCUcGGCCCGGGACgUGGu--- -3'
miRNA:   3'- -GGC---UGAGGA-CCGGGCUUUG-GCCuauu -5'
10882 5' -55.4 NC_002794.1 + 178801 0.69 0.862024
Target:  5'- gCGGCUC--GGCCCGGgggGACCGGGc-- -3'
miRNA:   3'- gGCUGAGgaCCGGGCU---UUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 86385 0.69 0.869413
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUGu -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86649 0.69 0.869413
Target:  5'- gCCGggacggauGCUCC-GGCCCGAgcccGACCGGuUGGa -3'
miRNA:   3'- -GGC--------UGAGGaCCGGGCU----UUGGCCuAUU- -5'
10882 5' -55.4 NC_002794.1 + 94020 0.69 0.869413
Target:  5'- gCCGGCggguuccgCCggcgGGCCCGAGAgCGGcgGc -3'
miRNA:   3'- -GGCUGa-------GGa---CCGGGCUUUgGCCuaUu -5'
10882 5' -55.4 NC_002794.1 + 86193 0.69 0.869413
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUGu -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 73688 0.69 0.869413
Target:  5'- cCCG-UUCCUGGCgCGAcagucuuuccucAACCGGAc-- -3'
miRNA:   3'- -GGCuGAGGACCGgGCU------------UUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 65165 0.69 0.869413
Target:  5'- cCCG--UCCgUGGCgCCGAGACCGGcgGGu -3'
miRNA:   3'- -GGCugAGG-ACCG-GGCUUUGGCCuaUU- -5'
10882 5' -55.4 NC_002794.1 + 44188 0.68 0.876596
Target:  5'- gUCGACUCCgGGC--GAAGCCGGGc-- -3'
miRNA:   3'- -GGCUGAGGaCCGggCUUUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 10319 0.68 0.876596
Target:  5'- uCCGACgacucggCCgucgucGGCgCCGcGACCGGGUGAc -3'
miRNA:   3'- -GGCUGa------GGa-----CCG-GGCuUUGGCCUAUU- -5'
10882 5' -55.4 NC_002794.1 + 28734 0.68 0.876596
Target:  5'- aCCGugUCCccgaGGCCCGucGCUccguaGGAUGAc -3'
miRNA:   3'- -GGCugAGGa---CCGGGCuuUGG-----CCUAUU- -5'
10882 5' -55.4 NC_002794.1 + 86145 0.68 0.876596
Target:  5'- gCCGggacggauGCUCCgGGCCaCGcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86505 0.68 0.876596
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86337 0.68 0.876596
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 126665 0.68 0.883566
Target:  5'- aCCGACgggCCgcggcgagGGCCCG-AAUCGGGg-- -3'
miRNA:   3'- -GGCUGa--GGa-------CCGGGCuUUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 190921 0.68 0.883566
Target:  5'- uCCcACUCCccGGCCCGcAGCCGG-UAGc -3'
miRNA:   3'- -GGcUGAGGa-CCGGGCuUUGGCCuAUU- -5'
10882 5' -55.4 NC_002794.1 + 189998 0.68 0.883566
Target:  5'- uCCGGgUCCaucGGCCCGu--CCGGGUc- -3'
miRNA:   3'- -GGCUgAGGa--CCGGGCuuuGGCCUAuu -5'
10882 5' -55.4 NC_002794.1 + 155909 0.68 0.883566
Target:  5'- aCCGGCUCgacGUgCGGAGCCGGGUGc -3'
miRNA:   3'- -GGCUGAGgacCGgGCUUUGGCCUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.