miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 5' -55.4 NC_002794.1 + 288 0.68 0.89032
Target:  5'- gCGGC-CCUGGCgcgCCGAAcGCCGGGc-- -3'
miRNA:   3'- gGCUGaGGACCG---GGCUU-UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 124469 0.68 0.903164
Target:  5'- gUCGGCgucgCCgccgcacGCCCGGAccGCCGGAUGGa -3'
miRNA:   3'- -GGCUGa---GGac-----CGGGCUU--UGGCCUAUU- -5'
10882 5' -55.4 NC_002794.1 + 148435 0.68 0.909248
Target:  5'- gCCGGCUCCUGGCUgGcgcucuACUGGc--- -3'
miRNA:   3'- -GGCUGAGGACCGGgCuu----UGGCCuauu -5'
10882 5' -55.4 NC_002794.1 + 66472 0.68 0.909248
Target:  5'- -gGGCUCCcGGCCaCGAuagcCCGGAUu- -3'
miRNA:   3'- ggCUGAGGaCCGG-GCUuu--GGCCUAuu -5'
10882 5' -55.4 NC_002794.1 + 135453 0.67 0.915102
Target:  5'- aCgGGCUCCcggGGCCCGcgGCCGa---- -3'
miRNA:   3'- -GgCUGAGGa--CCGGGCuuUGGCcuauu -5'
10882 5' -55.4 NC_002794.1 + 44216 0.67 0.920726
Target:  5'- uCCGGCUCg-GGCgCCGAGggcucgguGCCGGGc-- -3'
miRNA:   3'- -GGCUGAGgaCCG-GGCUU--------UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 140407 0.67 0.920726
Target:  5'- uCCGACguuaUCUcgggUGGCCgCGAcguacAACCGGAUGu -3'
miRNA:   3'- -GGCUG----AGG----ACCGG-GCU-----UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 80938 0.67 0.925589
Target:  5'- aCCGACUUCUGcGCCUGccgcgccAAGCuCGGGUu- -3'
miRNA:   3'- -GGCUGAGGAC-CGGGC-------UUUG-GCCUAuu -5'
10882 5' -55.4 NC_002794.1 + 153282 0.67 0.926118
Target:  5'- gCCGAC-CCgucGCCCGAGacgcagGCCGGGg-- -3'
miRNA:   3'- -GGCUGaGGac-CGGGCUU------UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 142904 0.67 0.931278
Target:  5'- cCCGGCgUCCUccggGGgCCGGAGCaGGAUGu -3'
miRNA:   3'- -GGCUG-AGGA----CCgGGCUUUGgCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 37018 0.67 0.931278
Target:  5'- gCGGCUCg-GGCCCGAuguaGACCuucaGGGUGu -3'
miRNA:   3'- gGCUGAGgaCCGGGCU----UUGG----CCUAUu -5'
10882 5' -55.4 NC_002794.1 + 114729 0.66 0.940903
Target:  5'- gCGGCUCCgGGUUCGucGAGCCGGc--- -3'
miRNA:   3'- gGCUGAGGaCCGGGC--UUUGGCCuauu -5'
10882 5' -55.4 NC_002794.1 + 108021 0.66 0.940903
Target:  5'- aCCGGCacgugCUcGGCCUGGAAuuCCGGGUGc -3'
miRNA:   3'- -GGCUGa----GGaCCGGGCUUU--GGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 16409 0.66 0.940903
Target:  5'- gUCGACUCUUGGCgUu--ACCGGAc-- -3'
miRNA:   3'- -GGCUGAGGACCGgGcuuUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 63317 0.66 0.945371
Target:  5'- aCCGA-UCCggcggggGGCCCGAgcgcgGACCGGu--- -3'
miRNA:   3'- -GGCUgAGGa------CCGGGCU-----UUGGCCuauu -5'
10882 5' -55.4 NC_002794.1 + 43243 0.66 0.945371
Target:  5'- gCGGCaCC-GGCCgGAAcGCCGGGUGGu -3'
miRNA:   3'- gGCUGaGGaCCGGgCUU-UGGCCUAUU- -5'
10882 5' -55.4 NC_002794.1 + 18378 0.66 0.945371
Target:  5'- uUCGACUCCcGGCgCGAuGCCGa---- -3'
miRNA:   3'- -GGCUGAGGaCCGgGCUuUGGCcuauu -5'
10882 5' -55.4 NC_002794.1 + 150793 0.66 0.948362
Target:  5'- gCGACUCCaGGCCCcgcggcggacggccGAGccGCUGGAg-- -3'
miRNA:   3'- gGCUGAGGaCCGGG--------------CUU--UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 191427 0.66 0.94961
Target:  5'- cCCGAC-CCgGGUCCGGcucucacACCGGAc-- -3'
miRNA:   3'- -GGCUGaGGaCCGGGCUu------UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 50352 0.66 0.953625
Target:  5'- aCCGGCUCCgccaUGaCCgCGGAGCCGGc--- -3'
miRNA:   3'- -GGCUGAGG----ACcGG-GCUUUGGCCuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.