Results 61 - 69 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10882 | 5' | -55.4 | NC_002794.1 | + | 86553 | 0.66 | 0.953625 |
Target: 5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUu- -3' miRNA: 3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAuu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 50352 | 0.66 | 0.953625 |
Target: 5'- aCCGGCUCCgccaUGaCCgCGGAGCCGGc--- -3' miRNA: 3'- -GGCUGAGG----ACcGG-GCUUUGGCCuauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 134682 | 0.66 | 0.957419 |
Target: 5'- gCGGCcgcgCUUGGCUCGAccgccucugggGGCCGGAg-- -3' miRNA: 3'- gGCUGa---GGACCGGGCU-----------UUGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 17442 | 0.66 | 0.957419 |
Target: 5'- gCCGGCgCUcgGGCCCGcGACCGaGGUc- -3' miRNA: 3'- -GGCUGaGGa-CCGGGCuUUGGC-CUAuu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 191972 | 0.66 | 0.957419 |
Target: 5'- aCGGCUCCUccgacGGCuccuCCGAcGGCCGGGa-- -3' miRNA: 3'- gGCUGAGGA-----CCG----GGCU-UUGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 42661 | 0.66 | 0.957419 |
Target: 5'- gCCGACggcgCCgccGGCacgggguacgCCGAGACCGGcgAGc -3' miRNA: 3'- -GGCUGa---GGa--CCG----------GGCUUUGGCCuaUU- -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 50906 | 0.66 | 0.957419 |
Target: 5'- gCCGACUCCa-GCugCCGGAGCuCGGAc-- -3' miRNA: 3'- -GGCUGAGGacCG--GGCUUUG-GCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 82164 | 0.66 | 0.957419 |
Target: 5'- aCGGCUCCgGcGCCCGAGccauaaagcCCGGGc-- -3' miRNA: 3'- gGCUGAGGaC-CGGGCUUu--------GGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 34972 | 0.66 | 0.960995 |
Target: 5'- cCCGuC-CCUGGCCaCGAAacugcGCCGGcUGc -3' miRNA: 3'- -GGCuGaGGACCGG-GCUU-----UGGCCuAUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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