miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 5' -55.4 NC_002794.1 + 153282 0.67 0.926118
Target:  5'- gCCGAC-CCgucGCCCGAGacgcagGCCGGGg-- -3'
miRNA:   3'- -GGCUGaGGac-CGGGCUU------UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 80938 0.67 0.925589
Target:  5'- aCCGACUUCUGcGCCUGccgcgccAAGCuCGGGUu- -3'
miRNA:   3'- -GGCUGAGGAC-CGGGC-------UUUG-GCCUAuu -5'
10882 5' -55.4 NC_002794.1 + 140407 0.67 0.920726
Target:  5'- uCCGACguuaUCUcgggUGGCCgCGAcguacAACCGGAUGu -3'
miRNA:   3'- -GGCUG----AGG----ACCGG-GCU-----UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 44216 0.67 0.920726
Target:  5'- uCCGGCUCg-GGCgCCGAGggcucgguGCCGGGc-- -3'
miRNA:   3'- -GGCUGAGgaCCG-GGCUU--------UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 135453 0.67 0.915102
Target:  5'- aCgGGCUCCcggGGCCCGcgGCCGa---- -3'
miRNA:   3'- -GgCUGAGGa--CCGGGCuuUGGCcuauu -5'
10882 5' -55.4 NC_002794.1 + 148435 0.68 0.909248
Target:  5'- gCCGGCUCCUGGCUgGcgcucuACUGGc--- -3'
miRNA:   3'- -GGCUGAGGACCGGgCuu----UGGCCuauu -5'
10882 5' -55.4 NC_002794.1 + 66472 0.68 0.909248
Target:  5'- -gGGCUCCcGGCCaCGAuagcCCGGAUu- -3'
miRNA:   3'- ggCUGAGGaCCGG-GCUuu--GGCCUAuu -5'
10882 5' -55.4 NC_002794.1 + 124469 0.68 0.903164
Target:  5'- gUCGGCgucgCCgccgcacGCCCGGAccGCCGGAUGGa -3'
miRNA:   3'- -GGCUGa---GGac-----CGGGCUU--UGGCCUAUU- -5'
10882 5' -55.4 NC_002794.1 + 288 0.68 0.89032
Target:  5'- gCGGC-CCUGGCgcgCCGAAcGCCGGGc-- -3'
miRNA:   3'- gGCUGaGGACCG---GGCUU-UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 126665 0.68 0.883566
Target:  5'- aCCGACgggCCgcggcgagGGCCCG-AAUCGGGg-- -3'
miRNA:   3'- -GGCUGa--GGa-------CCGGGCuUUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 190921 0.68 0.883566
Target:  5'- uCCcACUCCccGGCCCGcAGCCGG-UAGc -3'
miRNA:   3'- -GGcUGAGGa-CCGGGCuUUGGCCuAUU- -5'
10882 5' -55.4 NC_002794.1 + 155909 0.68 0.883566
Target:  5'- aCCGGCUCgacGUgCGGAGCCGGGUGc -3'
miRNA:   3'- -GGCUGAGgacCGgGCUUUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 189998 0.68 0.883566
Target:  5'- uCCGGgUCCaucGGCCCGu--CCGGGUc- -3'
miRNA:   3'- -GGCUgAGGa--CCGGGCuuuGGCCUAuu -5'
10882 5' -55.4 NC_002794.1 + 44188 0.68 0.876596
Target:  5'- gUCGACUCCgGGC--GAAGCCGGGc-- -3'
miRNA:   3'- -GGCUGAGGaCCGggCUUUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 10319 0.68 0.876596
Target:  5'- uCCGACgacucggCCgucgucGGCgCCGcGACCGGGUGAc -3'
miRNA:   3'- -GGCUGa------GGa-----CCG-GGCuUUGGCCUAUU- -5'
10882 5' -55.4 NC_002794.1 + 28734 0.68 0.876596
Target:  5'- aCCGugUCCccgaGGCCCGucGCUccguaGGAUGAc -3'
miRNA:   3'- -GGCugAGGa---CCGGGCuuUGG-----CCUAUU- -5'
10882 5' -55.4 NC_002794.1 + 86145 0.68 0.876596
Target:  5'- gCCGggacggauGCUCCgGGCCaCGcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86505 0.68 0.876596
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86337 0.68 0.876596
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86385 0.69 0.869413
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUGu -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.