miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 5' -55.4 NC_002794.1 + 65165 0.69 0.869413
Target:  5'- cCCG--UCCgUGGCgCCGAGACCGGcgGGu -3'
miRNA:   3'- -GGCugAGG-ACCG-GGCUUUGGCCuaUU- -5'
10882 5' -55.4 NC_002794.1 + 73688 0.69 0.869413
Target:  5'- cCCG-UUCCUGGCgCGAcagucuuuccucAACCGGAc-- -3'
miRNA:   3'- -GGCuGAGGACCGgGCU------------UUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 86193 0.69 0.869413
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUGu -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86385 0.69 0.869413
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUGu -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86649 0.69 0.869413
Target:  5'- gCCGggacggauGCUCC-GGCCCGAgcccGACCGGuUGGa -3'
miRNA:   3'- -GGC--------UGAGGaCCGGGCU----UUGGCCuAUU- -5'
10882 5' -55.4 NC_002794.1 + 82941 0.69 0.862024
Target:  5'- uCCGACUCCaGGCCCGccgcGCaCGGc--- -3'
miRNA:   3'- -GGCUGAGGaCCGGGCuu--UG-GCCuauu -5'
10882 5' -55.4 NC_002794.1 + 178801 0.69 0.862024
Target:  5'- gCGGCUC--GGCCCGGgggGACCGGGc-- -3'
miRNA:   3'- gGCUGAGgaCCGGGCU---UUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 151966 0.69 0.862024
Target:  5'- cCCGgguGCUCCUcGGCCCGGGACgUGGu--- -3'
miRNA:   3'- -GGC---UGAGGA-CCGGGCUUUG-GCCuauu -5'
10882 5' -55.4 NC_002794.1 + 68318 0.69 0.862024
Target:  5'- gCCGACgcguUCCgcGGCCUGGuGACCGGGUu- -3'
miRNA:   3'- -GGCUG----AGGa-CCGGGCU-UUGGCCUAuu -5'
10882 5' -55.4 NC_002794.1 + 38426 0.69 0.854433
Target:  5'- gCCGACUCCaUGGCggCG-GGCCGGAc-- -3'
miRNA:   3'- -GGCUGAGG-ACCGg-GCuUUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 113532 0.69 0.854433
Target:  5'- gCCGGCUCggcgucgccGGCCCGGAgcaggcGCCGGAc-- -3'
miRNA:   3'- -GGCUGAGga-------CCGGGCUU------UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 32582 0.69 0.838673
Target:  5'- gCGGCggugCCgGGgCCGggGCCGGGg-- -3'
miRNA:   3'- gGCUGa---GGaCCgGGCuuUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 115168 0.7 0.82134
Target:  5'- aCCaGCUCCUgguagacGGCCCGguGCCGGcgGu -3'
miRNA:   3'- -GGcUGAGGA-------CCGGGCuuUGGCCuaUu -5'
10882 5' -55.4 NC_002794.1 + 43667 0.7 0.805023
Target:  5'- gCCgGGCUCUcgGGCCCGGGcgcggaccauGCCGGAg-- -3'
miRNA:   3'- -GG-CUGAGGa-CCGGGCUU----------UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 87044 0.7 0.796211
Target:  5'- aCCGGCgc--GGCUCGggGCCGGGUc- -3'
miRNA:   3'- -GGCUGaggaCCGGGCuuUGGCCUAuu -5'
10882 5' -55.4 NC_002794.1 + 86601 0.7 0.787255
Target:  5'- gCCGggacggauGCUCC-GGCUCGAgcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGGGCU----UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86433 0.7 0.787255
Target:  5'- gCCGggacggauGCUCC-GGCUCGAgcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGGGCU----UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86241 0.7 0.787255
Target:  5'- gCCGggacggauGCUCC-GGCUCGAgcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGGGCU----UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 141133 0.71 0.778163
Target:  5'- cCCGGCUCCgaguCgCCGAAGCCGGcgGAu -3'
miRNA:   3'- -GGCUGAGGacc-G-GGCUUUGGCCuaUU- -5'
10882 5' -55.4 NC_002794.1 + 147511 0.71 0.768945
Target:  5'- aCCGAgUUCCUcGGCCUGggGCUGGu--- -3'
miRNA:   3'- -GGCU-GAGGA-CCGGGCuuUGGCCuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.