Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10882 | 5' | -55.4 | NC_002794.1 | + | 133510 | 0.71 | 0.758669 |
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Target: 5'- uCCGACggcgaCCUGGCCguUGAguuggccGACCGGGUAc -3' miRNA: 3'- -GGCUGa----GGACCGG--GCU-------UUGGCCUAUu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 5063 | 0.72 | 0.730977 |
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Target: 5'- uUGACUCaccgacagGGCCCGAgcgaGACCGGAg-- -3' miRNA: 3'- gGCUGAGga------CCGGGCU----UUGGCCUauu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 19281 | 0.72 | 0.681713 |
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Target: 5'- gCGuCUCCUGGCCUGGAGCCu----- -3' miRNA: 3'- gGCuGAGGACCGGGCUUUGGccuauu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 57399 | 0.73 | 0.671706 |
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Target: 5'- aCCGGCUCCgGcGCCCGcguGGCCGGcGUGc -3' miRNA: 3'- -GGCUGAGGaC-CGGGCu--UUGGCC-UAUu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 151652 | 0.75 | 0.531804 |
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Target: 5'- gCCGGCaCUUGGCUCGccGCCGGGUGAc -3' miRNA: 3'- -GGCUGaGGACCGGGCuuUGGCCUAUU- -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 186010 | 0.76 | 0.5029 |
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Target: 5'- uCCGccGCUCCgGGCCCGGGcCCGGAc-- -3' miRNA: 3'- -GGC--UGAGGaCCGGGCUUuGGCCUauu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 86097 | 0.76 | 0.493416 |
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Target: 5'- gCCGggacggauGCUCC-GGCCCGAgcccGACCGGAUGc -3' miRNA: 3'- -GGC--------UGAGGaCCGGGCU----UUGGCCUAUu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 86289 | 0.76 | 0.493416 |
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Target: 5'- gCCGggacggauGCUCC-GGCCCGAgcccGACCGGAUGc -3' miRNA: 3'- -GGC--------UGAGGaCCGGGCU----UUGGCCUAUu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 24150 | 1.07 | 0.005754 |
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Target: 5'- uCCGACUCCUGGCCCGAAACCGGAUAAc -3' miRNA: 3'- -GGCUGAGGACCGGGCUUUGGCCUAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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