miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 5' -55.4 NC_002794.1 + 288 0.68 0.89032
Target:  5'- gCGGC-CCUGGCgcgCCGAAcGCCGGGc-- -3'
miRNA:   3'- gGCUGaGGACCG---GGCUU-UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 5063 0.72 0.730977
Target:  5'- uUGACUCaccgacagGGCCCGAgcgaGACCGGAg-- -3'
miRNA:   3'- gGCUGAGga------CCGGGCU----UUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 10319 0.68 0.876596
Target:  5'- uCCGACgacucggCCgucgucGGCgCCGcGACCGGGUGAc -3'
miRNA:   3'- -GGCUGa------GGa-----CCG-GGCuUUGGCCUAUU- -5'
10882 5' -55.4 NC_002794.1 + 16409 0.66 0.940903
Target:  5'- gUCGACUCUUGGCgUu--ACCGGAc-- -3'
miRNA:   3'- -GGCUGAGGACCGgGcuuUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 17442 0.66 0.957419
Target:  5'- gCCGGCgCUcgGGCCCGcGACCGaGGUc- -3'
miRNA:   3'- -GGCUGaGGa-CCGGGCuUUGGC-CUAuu -5'
10882 5' -55.4 NC_002794.1 + 18378 0.66 0.945371
Target:  5'- uUCGACUCCcGGCgCGAuGCCGa---- -3'
miRNA:   3'- -GGCUGAGGaCCGgGCUuUGGCcuauu -5'
10882 5' -55.4 NC_002794.1 + 19281 0.72 0.681713
Target:  5'- gCGuCUCCUGGCCUGGAGCCu----- -3'
miRNA:   3'- gGCuGAGGACCGGGCUUUGGccuauu -5'
10882 5' -55.4 NC_002794.1 + 24150 1.07 0.005754
Target:  5'- uCCGACUCCUGGCCCGAAACCGGAUAAc -3'
miRNA:   3'- -GGCUGAGGACCGGGCUUUGGCCUAUU- -5'
10882 5' -55.4 NC_002794.1 + 28734 0.68 0.876596
Target:  5'- aCCGugUCCccgaGGCCCGucGCUccguaGGAUGAc -3'
miRNA:   3'- -GGCugAGGa---CCGGGCuuUGG-----CCUAUU- -5'
10882 5' -55.4 NC_002794.1 + 32582 0.69 0.838673
Target:  5'- gCGGCggugCCgGGgCCGggGCCGGGg-- -3'
miRNA:   3'- gGCUGa---GGaCCgGGCuuUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 34972 0.66 0.960995
Target:  5'- cCCGuC-CCUGGCCaCGAAacugcGCCGGcUGc -3'
miRNA:   3'- -GGCuGaGGACCGG-GCUU-----UGGCCuAUu -5'
10882 5' -55.4 NC_002794.1 + 37018 0.67 0.931278
Target:  5'- gCGGCUCg-GGCCCGAuguaGACCuucaGGGUGu -3'
miRNA:   3'- gGCUGAGgaCCGGGCU----UUGG----CCUAUu -5'
10882 5' -55.4 NC_002794.1 + 38426 0.69 0.854433
Target:  5'- gCCGACUCCaUGGCggCG-GGCCGGAc-- -3'
miRNA:   3'- -GGCUGAGG-ACCGg-GCuUUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 42661 0.66 0.957419
Target:  5'- gCCGACggcgCCgccGGCacgggguacgCCGAGACCGGcgAGc -3'
miRNA:   3'- -GGCUGa---GGa--CCG----------GGCUUUGGCCuaUU- -5'
10882 5' -55.4 NC_002794.1 + 43243 0.66 0.945371
Target:  5'- gCGGCaCC-GGCCgGAAcGCCGGGUGGu -3'
miRNA:   3'- gGCUGaGGaCCGGgCUU-UGGCCUAUU- -5'
10882 5' -55.4 NC_002794.1 + 43667 0.7 0.805023
Target:  5'- gCCgGGCUCUcgGGCCCGGGcgcggaccauGCCGGAg-- -3'
miRNA:   3'- -GG-CUGAGGa-CCGGGCUU----------UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 44188 0.68 0.876596
Target:  5'- gUCGACUCCgGGC--GAAGCCGGGc-- -3'
miRNA:   3'- -GGCUGAGGaCCGggCUUUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 44216 0.67 0.920726
Target:  5'- uCCGGCUCg-GGCgCCGAGggcucgguGCCGGGc-- -3'
miRNA:   3'- -GGCUGAGgaCCG-GGCUU--------UGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 50352 0.66 0.953625
Target:  5'- aCCGGCUCCgccaUGaCCgCGGAGCCGGc--- -3'
miRNA:   3'- -GGCUGAGG----ACcGG-GCUUUGGCCuauu -5'
10882 5' -55.4 NC_002794.1 + 50906 0.66 0.957419
Target:  5'- gCCGACUCCa-GCugCCGGAGCuCGGAc-- -3'
miRNA:   3'- -GGCUGAGGacCG--GGCUUUG-GCCUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.