miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10882 5' -55.4 NC_002794.1 + 57399 0.73 0.671706
Target:  5'- aCCGGCUCCgGcGCCCGcguGGCCGGcGUGc -3'
miRNA:   3'- -GGCUGAGGaC-CGGGCu--UUGGCC-UAUu -5'
10882 5' -55.4 NC_002794.1 + 63317 0.66 0.945371
Target:  5'- aCCGA-UCCggcggggGGCCCGAgcgcgGACCGGu--- -3'
miRNA:   3'- -GGCUgAGGa------CCGGGCU-----UUGGCCuauu -5'
10882 5' -55.4 NC_002794.1 + 65165 0.69 0.869413
Target:  5'- cCCG--UCCgUGGCgCCGAGACCGGcgGGu -3'
miRNA:   3'- -GGCugAGG-ACCG-GGCUUUGGCCuaUU- -5'
10882 5' -55.4 NC_002794.1 + 66472 0.68 0.909248
Target:  5'- -gGGCUCCcGGCCaCGAuagcCCGGAUu- -3'
miRNA:   3'- ggCUGAGGaCCGG-GCUuu--GGCCUAuu -5'
10882 5' -55.4 NC_002794.1 + 68318 0.69 0.862024
Target:  5'- gCCGACgcguUCCgcGGCCUGGuGACCGGGUu- -3'
miRNA:   3'- -GGCUG----AGGa-CCGGGCU-UUGGCCUAuu -5'
10882 5' -55.4 NC_002794.1 + 73688 0.69 0.869413
Target:  5'- cCCG-UUCCUGGCgCGAcagucuuuccucAACCGGAc-- -3'
miRNA:   3'- -GGCuGAGGACCGgGCU------------UUGGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 77974 0.66 0.953625
Target:  5'- gCCGACUCCUccGCCuCGGAACggCGGGc-- -3'
miRNA:   3'- -GGCUGAGGAc-CGG-GCUUUG--GCCUauu -5'
10882 5' -55.4 NC_002794.1 + 80938 0.67 0.925589
Target:  5'- aCCGACUUCUGcGCCUGccgcgccAAGCuCGGGUu- -3'
miRNA:   3'- -GGCUGAGGAC-CGGGC-------UUUG-GCCUAuu -5'
10882 5' -55.4 NC_002794.1 + 82164 0.66 0.957419
Target:  5'- aCGGCUCCgGcGCCCGAGccauaaagcCCGGGc-- -3'
miRNA:   3'- gGCUGAGGaC-CGGGCUUu--------GGCCUauu -5'
10882 5' -55.4 NC_002794.1 + 82941 0.69 0.862024
Target:  5'- uCCGACUCCaGGCCCGccgcGCaCGGc--- -3'
miRNA:   3'- -GGCUGAGGaCCGGGCuu--UG-GCCuauu -5'
10882 5' -55.4 NC_002794.1 + 86097 0.76 0.493416
Target:  5'- gCCGggacggauGCUCC-GGCCCGAgcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGGGCU----UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86145 0.68 0.876596
Target:  5'- gCCGggacggauGCUCCgGGCCaCGcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86193 0.69 0.869413
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUGu -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86241 0.7 0.787255
Target:  5'- gCCGggacggauGCUCC-GGCUCGAgcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGGGCU----UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86289 0.76 0.493416
Target:  5'- gCCGggacggauGCUCC-GGCCCGAgcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGGGCU----UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86337 0.68 0.876596
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86385 0.69 0.869413
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUGu -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86433 0.7 0.787255
Target:  5'- gCCGggacggauGCUCC-GGCUCGAgcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGGGCU----UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86505 0.68 0.876596
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUGc -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAUu -5'
10882 5' -55.4 NC_002794.1 + 86553 0.66 0.953625
Target:  5'- gCCGggacggauGCUCCgGGCCgCGcccGACCGGAUu- -3'
miRNA:   3'- -GGC--------UGAGGaCCGG-GCu--UUGGCCUAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.