Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10882 | 5' | -55.4 | NC_002794.1 | + | 151966 | 0.69 | 0.862024 |
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Target: 5'- cCCGgguGCUCCUcGGCCCGGGACgUGGu--- -3' miRNA: 3'- -GGC---UGAGGA-CCGGGCUUUG-GCCuauu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 153282 | 0.67 | 0.926118 |
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Target: 5'- gCCGAC-CCgucGCCCGAGacgcagGCCGGGg-- -3' miRNA: 3'- -GGCUGaGGac-CGGGCUU------UGGCCUauu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 155909 | 0.68 | 0.883566 |
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Target: 5'- aCCGGCUCgacGUgCGGAGCCGGGUGc -3' miRNA: 3'- -GGCUGAGgacCGgGCUUUGGCCUAUu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 178801 | 0.69 | 0.862024 |
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Target: 5'- gCGGCUC--GGCCCGGgggGACCGGGc-- -3' miRNA: 3'- gGCUGAGgaCCGGGCU---UUGGCCUauu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 186010 | 0.76 | 0.5029 |
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Target: 5'- uCCGccGCUCCgGGCCCGGGcCCGGAc-- -3' miRNA: 3'- -GGC--UGAGGaCCGGGCUUuGGCCUauu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 189998 | 0.68 | 0.883566 |
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Target: 5'- uCCGGgUCCaucGGCCCGu--CCGGGUc- -3' miRNA: 3'- -GGCUgAGGa--CCGGGCuuuGGCCUAuu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 190921 | 0.68 | 0.883566 |
|
Target: 5'- uCCcACUCCccGGCCCGcAGCCGG-UAGc -3' miRNA: 3'- -GGcUGAGGa-CCGGGCuUUGGCCuAUU- -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 191427 | 0.66 | 0.94961 |
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Target: 5'- cCCGAC-CCgGGUCCGGcucucacACCGGAc-- -3' miRNA: 3'- -GGCUGaGGaCCGGGCUu------UGGCCUauu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 191972 | 0.66 | 0.957419 |
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Target: 5'- aCGGCUCCUccgacGGCuccuCCGAcGGCCGGGa-- -3' miRNA: 3'- gGCUGAGGA-----CCG----GGCU-UUGGCCUauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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