Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10882 | 5' | -55.4 | NC_002794.1 | + | 82164 | 0.66 | 0.957419 |
Target: 5'- aCGGCUCCgGcGCCCGAGccauaaagcCCGGGc-- -3' miRNA: 3'- gGCUGAGGaC-CGGGCUUu--------GGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 80938 | 0.67 | 0.925589 |
Target: 5'- aCCGACUUCUGcGCCUGccgcgccAAGCuCGGGUu- -3' miRNA: 3'- -GGCUGAGGAC-CGGGC-------UUUG-GCCUAuu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 77974 | 0.66 | 0.953625 |
Target: 5'- gCCGACUCCUccGCCuCGGAACggCGGGc-- -3' miRNA: 3'- -GGCUGAGGAc-CGG-GCUUUG--GCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 73688 | 0.69 | 0.869413 |
Target: 5'- cCCG-UUCCUGGCgCGAcagucuuuccucAACCGGAc-- -3' miRNA: 3'- -GGCuGAGGACCGgGCU------------UUGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 68318 | 0.69 | 0.862024 |
Target: 5'- gCCGACgcguUCCgcGGCCUGGuGACCGGGUu- -3' miRNA: 3'- -GGCUG----AGGa-CCGGGCU-UUGGCCUAuu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 66472 | 0.68 | 0.909248 |
Target: 5'- -gGGCUCCcGGCCaCGAuagcCCGGAUu- -3' miRNA: 3'- ggCUGAGGaCCGG-GCUuu--GGCCUAuu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 65165 | 0.69 | 0.869413 |
Target: 5'- cCCG--UCCgUGGCgCCGAGACCGGcgGGu -3' miRNA: 3'- -GGCugAGG-ACCG-GGCUUUGGCCuaUU- -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 63317 | 0.66 | 0.945371 |
Target: 5'- aCCGA-UCCggcggggGGCCCGAgcgcgGACCGGu--- -3' miRNA: 3'- -GGCUgAGGa------CCGGGCU-----UUGGCCuauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 57399 | 0.73 | 0.671706 |
Target: 5'- aCCGGCUCCgGcGCCCGcguGGCCGGcGUGc -3' miRNA: 3'- -GGCUGAGGaC-CGGGCu--UUGGCC-UAUu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 50906 | 0.66 | 0.957419 |
Target: 5'- gCCGACUCCa-GCugCCGGAGCuCGGAc-- -3' miRNA: 3'- -GGCUGAGGacCG--GGCUUUG-GCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 50352 | 0.66 | 0.953625 |
Target: 5'- aCCGGCUCCgccaUGaCCgCGGAGCCGGc--- -3' miRNA: 3'- -GGCUGAGG----ACcGG-GCUUUGGCCuauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 44216 | 0.67 | 0.920726 |
Target: 5'- uCCGGCUCg-GGCgCCGAGggcucgguGCCGGGc-- -3' miRNA: 3'- -GGCUGAGgaCCG-GGCUU--------UGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 44188 | 0.68 | 0.876596 |
Target: 5'- gUCGACUCCgGGC--GAAGCCGGGc-- -3' miRNA: 3'- -GGCUGAGGaCCGggCUUUGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 43667 | 0.7 | 0.805023 |
Target: 5'- gCCgGGCUCUcgGGCCCGGGcgcggaccauGCCGGAg-- -3' miRNA: 3'- -GG-CUGAGGa-CCGGGCUU----------UGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 43243 | 0.66 | 0.945371 |
Target: 5'- gCGGCaCC-GGCCgGAAcGCCGGGUGGu -3' miRNA: 3'- gGCUGaGGaCCGGgCUU-UGGCCUAUU- -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 42661 | 0.66 | 0.957419 |
Target: 5'- gCCGACggcgCCgccGGCacgggguacgCCGAGACCGGcgAGc -3' miRNA: 3'- -GGCUGa---GGa--CCG----------GGCUUUGGCCuaUU- -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 38426 | 0.69 | 0.854433 |
Target: 5'- gCCGACUCCaUGGCggCG-GGCCGGAc-- -3' miRNA: 3'- -GGCUGAGG-ACCGg-GCuUUGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 37018 | 0.67 | 0.931278 |
Target: 5'- gCGGCUCg-GGCCCGAuguaGACCuucaGGGUGu -3' miRNA: 3'- gGCUGAGgaCCGGGCU----UUGG----CCUAUu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 34972 | 0.66 | 0.960995 |
Target: 5'- cCCGuC-CCUGGCCaCGAAacugcGCCGGcUGc -3' miRNA: 3'- -GGCuGaGGACCGG-GCUU-----UGGCCuAUu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 32582 | 0.69 | 0.838673 |
Target: 5'- gCGGCggugCCgGGgCCGggGCCGGGg-- -3' miRNA: 3'- gGCUGa---GGaCCgGGCuuUGGCCUauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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