Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10882 | 5' | -55.4 | NC_002794.1 | + | 28734 | 0.68 | 0.876596 |
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Target: 5'- aCCGugUCCccgaGGCCCGucGCUccguaGGAUGAc -3' miRNA: 3'- -GGCugAGGa---CCGGGCuuUGG-----CCUAUU- -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 24150 | 1.07 | 0.005754 |
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Target: 5'- uCCGACUCCUGGCCCGAAACCGGAUAAc -3' miRNA: 3'- -GGCUGAGGACCGGGCUUUGGCCUAUU- -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 19281 | 0.72 | 0.681713 |
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Target: 5'- gCGuCUCCUGGCCUGGAGCCu----- -3' miRNA: 3'- gGCuGAGGACCGGGCUUUGGccuauu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 18378 | 0.66 | 0.945371 |
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Target: 5'- uUCGACUCCcGGCgCGAuGCCGa---- -3' miRNA: 3'- -GGCUGAGGaCCGgGCUuUGGCcuauu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 17442 | 0.66 | 0.957419 |
|
Target: 5'- gCCGGCgCUcgGGCCCGcGACCGaGGUc- -3' miRNA: 3'- -GGCUGaGGa-CCGGGCuUUGGC-CUAuu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 16409 | 0.66 | 0.940903 |
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Target: 5'- gUCGACUCUUGGCgUu--ACCGGAc-- -3' miRNA: 3'- -GGCUGAGGACCGgGcuuUGGCCUauu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 10319 | 0.68 | 0.876596 |
|
Target: 5'- uCCGACgacucggCCgucgucGGCgCCGcGACCGGGUGAc -3' miRNA: 3'- -GGCUGa------GGa-----CCG-GGCuUUGGCCUAUU- -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 5063 | 0.72 | 0.730977 |
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Target: 5'- uUGACUCaccgacagGGCCCGAgcgaGACCGGAg-- -3' miRNA: 3'- gGCUGAGga------CCGGGCU----UUGGCCUauu -5' |
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| 10882 | 5' | -55.4 | NC_002794.1 | + | 288 | 0.68 | 0.89032 |
|
Target: 5'- gCGGC-CCUGGCgcgCCGAAcGCCGGGc-- -3' miRNA: 3'- gGCUGaGGACCG---GGCUU-UGGCCUauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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