Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10882 | 5' | -55.4 | NC_002794.1 | + | 17442 | 0.66 | 0.957419 |
Target: 5'- gCCGGCgCUcgGGCCCGcGACCGaGGUc- -3' miRNA: 3'- -GGCUGaGGa-CCGGGCuUUGGC-CUAuu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 191972 | 0.66 | 0.957419 |
Target: 5'- aCGGCUCCUccgacGGCuccuCCGAcGGCCGGGa-- -3' miRNA: 3'- gGCUGAGGA-----CCG----GGCU-UUGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 42661 | 0.66 | 0.957419 |
Target: 5'- gCCGACggcgCCgccGGCacgggguacgCCGAGACCGGcgAGc -3' miRNA: 3'- -GGCUGa---GGa--CCG----------GGCUUUGGCCuaUU- -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 50906 | 0.66 | 0.957419 |
Target: 5'- gCCGACUCCa-GCugCCGGAGCuCGGAc-- -3' miRNA: 3'- -GGCUGAGGacCG--GGCUUUG-GCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 82164 | 0.66 | 0.957419 |
Target: 5'- aCGGCUCCgGcGCCCGAGccauaaagcCCGGGc-- -3' miRNA: 3'- gGCUGAGGaC-CGGGCUUu--------GGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 18378 | 0.66 | 0.945371 |
Target: 5'- uUCGACUCCcGGCgCGAuGCCGa---- -3' miRNA: 3'- -GGCUGAGGaCCGgGCUuUGGCcuauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 63317 | 0.66 | 0.945371 |
Target: 5'- aCCGA-UCCggcggggGGCCCGAgcgcgGACCGGu--- -3' miRNA: 3'- -GGCUgAGGa------CCGGGCU-----UUGGCCuauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 288 | 0.68 | 0.89032 |
Target: 5'- gCGGC-CCUGGCgcgCCGAAcGCCGGGc-- -3' miRNA: 3'- gGCUGaGGACCG---GGCUU-UGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 66472 | 0.68 | 0.909248 |
Target: 5'- -gGGCUCCcGGCCaCGAuagcCCGGAUu- -3' miRNA: 3'- ggCUGAGGaCCGG-GCUuu--GGCCUAuu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 124469 | 0.68 | 0.903164 |
Target: 5'- gUCGGCgucgCCgccgcacGCCCGGAccGCCGGAUGGa -3' miRNA: 3'- -GGCUGa---GGac-----CGGGCUU--UGGCCUAUU- -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 148435 | 0.68 | 0.909248 |
Target: 5'- gCCGGCUCCUGGCUgGcgcucuACUGGc--- -3' miRNA: 3'- -GGCUGAGGACCGGgCuu----UGGCCuauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 135453 | 0.67 | 0.915102 |
Target: 5'- aCgGGCUCCcggGGCCCGcgGCCGa---- -3' miRNA: 3'- -GgCUGAGGa--CCGGGCuuUGGCcuauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 44216 | 0.67 | 0.920726 |
Target: 5'- uCCGGCUCg-GGCgCCGAGggcucgguGCCGGGc-- -3' miRNA: 3'- -GGCUGAGgaCCG-GGCUU--------UGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 80938 | 0.67 | 0.925589 |
Target: 5'- aCCGACUUCUGcGCCUGccgcgccAAGCuCGGGUu- -3' miRNA: 3'- -GGCUGAGGAC-CGGGC-------UUUG-GCCUAuu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 140407 | 0.67 | 0.920726 |
Target: 5'- uCCGACguuaUCUcgggUGGCCgCGAcguacAACCGGAUGu -3' miRNA: 3'- -GGCUG----AGG----ACCGG-GCU-----UUGGCCUAUu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 153282 | 0.67 | 0.926118 |
Target: 5'- gCCGAC-CCgucGCCCGAGacgcagGCCGGGg-- -3' miRNA: 3'- -GGCUGaGGac-CGGGCUU------UGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 16409 | 0.66 | 0.940903 |
Target: 5'- gUCGACUCUUGGCgUu--ACCGGAc-- -3' miRNA: 3'- -GGCUGAGGACCGgGcuuUGGCCUauu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 142904 | 0.67 | 0.931278 |
Target: 5'- cCCGGCgUCCUccggGGgCCGGAGCaGGAUGu -3' miRNA: 3'- -GGCUG-AGGA----CCgGGCUUUGgCCUAUu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 37018 | 0.67 | 0.931278 |
Target: 5'- gCGGCUCg-GGCCCGAuguaGACCuucaGGGUGu -3' miRNA: 3'- gGCUGAGgaCCGGGCU----UUGG----CCUAUu -5' |
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10882 | 5' | -55.4 | NC_002794.1 | + | 114729 | 0.66 | 0.940903 |
Target: 5'- gCGGCUCCgGGUUCGucGAGCCGGc--- -3' miRNA: 3'- gGCUGAGGaCCGGGC--UUUGGCCuauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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