miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10883 3' -55 NC_002794.1 + 146666 0.66 0.963967
Target:  5'- --cGUUGCuggaCGAGgagGACGuCUCGGCg -3'
miRNA:   3'- gcaCGACGuag-GCUCa--CUGC-GAGUCG- -5'
10883 3' -55 NC_002794.1 + 33056 0.66 0.963967
Target:  5'- aCGUGCUGUuccccacgCCGc-UGACGCUCGa- -3'
miRNA:   3'- -GCACGACGua------GGCucACUGCGAGUcg -5'
10883 3' -55 NC_002794.1 + 176612 0.66 0.960562
Target:  5'- cCG-GCacgGcCAUCCucGUGGCGUUCGGCc -3'
miRNA:   3'- -GCaCGa--C-GUAGGcuCACUGCGAGUCG- -5'
10883 3' -55 NC_002794.1 + 173885 0.66 0.960562
Target:  5'- uCGUGau-CGUCCGAG-GACGUgCAGUa -3'
miRNA:   3'- -GCACgacGUAGGCUCaCUGCGaGUCG- -5'
10883 3' -55 NC_002794.1 + 22576 0.66 0.960562
Target:  5'- aCG-GCcGCuGUCCaAGUcGCGCUCGGCa -3'
miRNA:   3'- -GCaCGaCG-UAGGcUCAcUGCGAGUCG- -5'
10883 3' -55 NC_002794.1 + 187808 0.66 0.956941
Target:  5'- --aGCgaGCGagCGAGUGagcggagcGCGCUCGGCu -3'
miRNA:   3'- gcaCGa-CGUagGCUCAC--------UGCGAGUCG- -5'
10883 3' -55 NC_002794.1 + 90073 0.66 0.956941
Target:  5'- aCGUGa-GUuggCCGA-UGugGCUCGGCa -3'
miRNA:   3'- -GCACgaCGua-GGCUcACugCGAGUCG- -5'
10883 3' -55 NC_002794.1 + 104588 0.66 0.956941
Target:  5'- -uUGUUGCGgcaCGAGUGcaggauGCGCUCGcGCa -3'
miRNA:   3'- gcACGACGUag-GCUCAC------UGCGAGU-CG- -5'
10883 3' -55 NC_002794.1 + 144991 0.66 0.953099
Target:  5'- cCG-GCgccggGCGUCCGccUGGCGCagCAGCu -3'
miRNA:   3'- -GCaCGa----CGUAGGCucACUGCGa-GUCG- -5'
10883 3' -55 NC_002794.1 + 118897 0.66 0.949033
Target:  5'- gGUGUUcGCguagGUCCGuggcGGUGGgGUUCAGCa -3'
miRNA:   3'- gCACGA-CG----UAGGC----UCACUgCGAGUCG- -5'
10883 3' -55 NC_002794.1 + 19984 0.66 0.949033
Target:  5'- uCGgGCUGUccGUCCuGGUGGCGCUgcGCa -3'
miRNA:   3'- -GCaCGACG--UAGGcUCACUGCGAguCG- -5'
10883 3' -55 NC_002794.1 + 144534 0.66 0.948614
Target:  5'- cCGUGCUGguggaacUGUCgGAG-GACGUgaugCAGCg -3'
miRNA:   3'- -GCACGAC-------GUAGgCUCaCUGCGa---GUCG- -5'
10883 3' -55 NC_002794.1 + 90172 0.67 0.94474
Target:  5'- cCGUGaaGCcUCCGAG-GACGCgCGGg -3'
miRNA:   3'- -GCACgaCGuAGGCUCaCUGCGaGUCg -5'
10883 3' -55 NC_002794.1 + 146853 0.67 0.94474
Target:  5'- gGUGCgcgucguucGCGUUCGGGUGggggGCGCggUCGGCc -3'
miRNA:   3'- gCACGa--------CGUAGGCUCAC----UGCG--AGUCG- -5'
10883 3' -55 NC_002794.1 + 14372 0.67 0.94474
Target:  5'- gCGUGCUGUcgGUCCGAGUcaACGuCUCccgAGUc -3'
miRNA:   3'- -GCACGACG--UAGGCUCAc-UGC-GAG---UCG- -5'
10883 3' -55 NC_002794.1 + 121143 0.67 0.940217
Target:  5'- gGUGCa-CAUCCGAGgcugcgaaGGCGUUCAGa -3'
miRNA:   3'- gCACGacGUAGGCUCa-------CUGCGAGUCg -5'
10883 3' -55 NC_002794.1 + 102439 0.67 0.940217
Target:  5'- --cGC-GCAugUCCGAGcUGACGCUCGa- -3'
miRNA:   3'- gcaCGaCGU--AGGCUC-ACUGCGAGUcg -5'
10883 3' -55 NC_002794.1 + 33735 0.67 0.930472
Target:  5'- gGUGCUGUAcacgacgCCG-GUGGCGCaccuguaCGGCg -3'
miRNA:   3'- gCACGACGUa------GGCuCACUGCGa------GUCG- -5'
10883 3' -55 NC_002794.1 + 182851 0.67 0.92996
Target:  5'- gCGUGCcGCucgCCGAGaucaucuUGGCGCccaccgUCGGCg -3'
miRNA:   3'- -GCACGaCGua-GGCUC-------ACUGCG------AGUCG- -5'
10883 3' -55 NC_002794.1 + 113433 0.67 0.925248
Target:  5'- gCGUuCUGCcgcgCCGucucGGCGCUCAGCa -3'
miRNA:   3'- -GCAcGACGua--GGCuca-CUGCGAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.