miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10883 5' -54.4 NC_002794.1 + 63323 0.66 0.97336
Target:  5'- cCGgcGGGGGgcccGAGCGCGGACc- -3'
miRNA:   3'- cGCuaCUCCCaguuCUCGUGCCUGca -5'
10883 5' -54.4 NC_002794.1 + 182317 0.66 0.970604
Target:  5'- gGCGGacGGGcGGUCGGGcGgGCGGGCGa -3'
miRNA:   3'- -CGCUa-CUC-CCAGUUCuCgUGCCUGCa -5'
10883 5' -54.4 NC_002794.1 + 87136 0.66 0.970604
Target:  5'- gGCgGGUGGGGGUgCA--GGC-CGGGCGg -3'
miRNA:   3'- -CG-CUACUCCCA-GUucUCGuGCCUGCa -5'
10883 5' -54.4 NC_002794.1 + 87094 0.66 0.970604
Target:  5'- gGCgGGUGGGGGUgCA--GGC-CGGGCGg -3'
miRNA:   3'- -CG-CUACUCCCA-GUucUCGuGCCUGCa -5'
10883 5' -54.4 NC_002794.1 + 87178 0.66 0.970604
Target:  5'- gGCgGGUGGGGGUgCA--GGC-CGGGCGg -3'
miRNA:   3'- -CG-CUACUCCCA-GUucUCGuGCCUGCa -5'
10883 5' -54.4 NC_002794.1 + 87220 0.66 0.970604
Target:  5'- gGCgGGUGGGGGUgCA--GGC-CGGGCGg -3'
miRNA:   3'- -CG-CUACUCCCA-GUucUCGuGCCUGCa -5'
10883 5' -54.4 NC_002794.1 + 87262 0.66 0.970604
Target:  5'- gGCgGGUGGGGGUgCA--GGC-CGGGCGg -3'
miRNA:   3'- -CG-CUACUCCCA-GUucUCGuGCCUGCa -5'
10883 5' -54.4 NC_002794.1 + 141439 0.66 0.96765
Target:  5'- gGCGccGGGGGcgcCGGGAGCGgCGcGGCGUc -3'
miRNA:   3'- -CGCuaCUCCCa--GUUCUCGU-GC-CUGCA- -5'
10883 5' -54.4 NC_002794.1 + 142584 0.66 0.964491
Target:  5'- cGCGAUGggcgcgcccuGGGGgaugaCGAGcuggcGCACGGGCGa -3'
miRNA:   3'- -CGCUAC----------UCCCa----GUUCu----CGUGCCUGCa -5'
10883 5' -54.4 NC_002794.1 + 160311 0.67 0.961123
Target:  5'- -gGAUGuucgucuuGGGgcuGGAGCGCGGAUGg -3'
miRNA:   3'- cgCUACu-------CCCaguUCUCGUGCCUGCa -5'
10883 5' -54.4 NC_002794.1 + 147236 0.67 0.961123
Target:  5'- cGCGAUG-GGccCGAGAGCAcucCGGGCa- -3'
miRNA:   3'- -CGCUACuCCcaGUUCUCGU---GCCUGca -5'
10883 5' -54.4 NC_002794.1 + 151043 0.67 0.953736
Target:  5'- cUGAUGAcGGG-CGAGuGCACGGcCGc -3'
miRNA:   3'- cGCUACU-CCCaGUUCuCGUGCCuGCa -5'
10883 5' -54.4 NC_002794.1 + 143641 0.67 0.94971
Target:  5'- -aGAUGGcGGGg-AAGAGCGUGGACGg -3'
miRNA:   3'- cgCUACU-CCCagUUCUCGUGCCUGCa -5'
10883 5' -54.4 NC_002794.1 + 94065 0.67 0.94971
Target:  5'- gGCGgcGGGGGgCGAGGGCACcuACGa -3'
miRNA:   3'- -CGCuaCUCCCaGUUCUCGUGccUGCa -5'
10883 5' -54.4 NC_002794.1 + 187680 0.67 0.945457
Target:  5'- gGCGAUGcGGGUCGAGcGGCccguUGGcCGUc -3'
miRNA:   3'- -CGCUACuCCCAGUUC-UCGu---GCCuGCA- -5'
10883 5' -54.4 NC_002794.1 + 149344 0.67 0.945457
Target:  5'- cCGGccGGGGUCGcgGGGGCGUGGACGg -3'
miRNA:   3'- cGCUacUCCCAGU--UCUCGUGCCUGCa -5'
10883 5' -54.4 NC_002794.1 + 116064 0.67 0.945457
Target:  5'- cGCGAcuGGGGUCGcGGAGCGCucGGCGc -3'
miRNA:   3'- -CGCUacUCCCAGU-UCUCGUGc-CUGCa -5'
10883 5' -54.4 NC_002794.1 + 64687 0.67 0.945457
Target:  5'- uGCGAcGAcGG-CGAggcGAGCGCGGACGa -3'
miRNA:   3'- -CGCUaCUcCCaGUU---CUCGUGCCUGCa -5'
10883 5' -54.4 NC_002794.1 + 115867 0.68 0.940974
Target:  5'- cGCGA--GGGGUCcGGGGCGuccgGGGCGUc -3'
miRNA:   3'- -CGCUacUCCCAGuUCUCGUg---CCUGCA- -5'
10883 5' -54.4 NC_002794.1 + 180703 0.68 0.93626
Target:  5'- gGCGGgcgGAccauggcucGGGUUcaGAGAcGCGCGGACGa -3'
miRNA:   3'- -CGCUa--CU---------CCCAG--UUCU-CGUGCCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.