miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10884 5' -57 NC_002794.1 + 145901 0.66 0.945475
Target:  5'- aGCGCGacGgggGAgUCGACCGcGCCGAgCGg -3'
miRNA:   3'- -CGCGCaaCa--CU-GGCUGGC-UGGCUgGC- -5'
10884 5' -57 NC_002794.1 + 176587 0.66 0.945475
Target:  5'- aCGgGaUGUGACucacggagagCGGCCGGCaCGGCCa -3'
miRNA:   3'- cGCgCaACACUG----------GCUGGCUG-GCUGGc -5'
10884 5' -57 NC_002794.1 + 153347 0.66 0.941149
Target:  5'- cGCGUGUUGUcagGACgCGGCCcGGCUGcgcGCCc -3'
miRNA:   3'- -CGCGCAACA---CUG-GCUGG-CUGGC---UGGc -5'
10884 5' -57 NC_002794.1 + 141645 0.66 0.941149
Target:  5'- gGC-CGgcGUGGCCGcgGCCG-CCGGCgGg -3'
miRNA:   3'- -CGcGCaaCACUGGC--UGGCuGGCUGgC- -5'
10884 5' -57 NC_002794.1 + 66857 0.66 0.941149
Target:  5'- gGCGCGgcGaGGCCGcGgCGugCGGCUGa -3'
miRNA:   3'- -CGCGCaaCaCUGGC-UgGCugGCUGGC- -5'
10884 5' -57 NC_002794.1 + 44244 0.66 0.941149
Target:  5'- cGgGCGgcucgGUG-CCGGgCGGCuCGGCCGc -3'
miRNA:   3'- -CgCGCaa---CACuGGCUgGCUG-GCUGGC- -5'
10884 5' -57 NC_002794.1 + 163821 0.66 0.940704
Target:  5'- -aGUGUUGUGGagauggacgauguCCGACCGcGCUGGCUu -3'
miRNA:   3'- cgCGCAACACU-------------GGCUGGC-UGGCUGGc -5'
10884 5' -57 NC_002794.1 + 129167 0.66 0.936606
Target:  5'- uCGCGgccgaUGGCCGuuCGAUCGGCCu -3'
miRNA:   3'- cGCGCaac--ACUGGCugGCUGGCUGGc -5'
10884 5' -57 NC_002794.1 + 19244 0.66 0.936606
Target:  5'- aGC-CGaugaUGUG-CCGACCGGCCGcgGCCc -3'
miRNA:   3'- -CGcGCa---ACACuGGCUGGCUGGC--UGGc -5'
10884 5' -57 NC_002794.1 + 15114 0.66 0.936606
Target:  5'- cGCGCcg-GaGACCGACCG-CCGugUu -3'
miRNA:   3'- -CGCGcaaCaCUGGCUGGCuGGCugGc -5'
10884 5' -57 NC_002794.1 + 120125 0.66 0.936606
Target:  5'- cGCGCGacgGcGACCgggGACgGGCCGguGCCGg -3'
miRNA:   3'- -CGCGCaa-CaCUGG---CUGgCUGGC--UGGC- -5'
10884 5' -57 NC_002794.1 + 141696 0.66 0.936606
Target:  5'- cGCGguccCGUcGUGGCCGaACCGgcguucGCCGAuCCGa -3'
miRNA:   3'- -CGC----GCAaCACUGGC-UGGC------UGGCU-GGC- -5'
10884 5' -57 NC_002794.1 + 180292 0.66 0.935201
Target:  5'- cGCGCcgccgcaacacGCCGGCCGGCgCGACCa -3'
miRNA:   3'- -CGCGcaacac-----UGGCUGGCUG-GCUGGc -5'
10884 5' -57 NC_002794.1 + 100324 0.66 0.934728
Target:  5'- cGCGCGgccggcgcacGGCCGGCucuCGACCG-CCGa -3'
miRNA:   3'- -CGCGCaaca------CUGGCUG---GCUGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 99927 0.66 0.931846
Target:  5'- cGUGCGgcGUGGucuugcggcuguUCGGCCGgACCG-CCGa -3'
miRNA:   3'- -CGCGCaaCACU------------GGCUGGC-UGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 157333 0.66 0.931846
Target:  5'- cGCGCGUccgGUcGACCGGaCGACgCGuuauCCGg -3'
miRNA:   3'- -CGCGCAa--CA-CUGGCUgGCUG-GCu---GGC- -5'
10884 5' -57 NC_002794.1 + 129060 0.66 0.931846
Target:  5'- cGCGCGacggUGUGuCgCGGCuggCGGCgGACCGu -3'
miRNA:   3'- -CGCGCa---ACACuG-GCUG---GCUGgCUGGC- -5'
10884 5' -57 NC_002794.1 + 191002 0.66 0.931846
Target:  5'- -gGCGUcGcGAUCGGCCGuuCGAUCGg -3'
miRNA:   3'- cgCGCAaCaCUGGCUGGCugGCUGGC- -5'
10884 5' -57 NC_002794.1 + 30093 0.66 0.926868
Target:  5'- gGCGCGc---GGCCGGucCCGACCcACCGc -3'
miRNA:   3'- -CGCGCaacaCUGGCU--GGCUGGcUGGC- -5'
10884 5' -57 NC_002794.1 + 120078 0.67 0.916256
Target:  5'- aCGCGgcgGUGGCggcgaCGACCGuGCCGAgCGc -3'
miRNA:   3'- cGCGCaa-CACUG-----GCUGGC-UGGCUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.