miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10884 5' -57 NC_002794.1 + 22780 1.11 0.002882
Target:  5'- cGCGCGUUGUGACCGACCGACCGACCGa -3'
miRNA:   3'- -CGCGCAACACUGGCUGGCUGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 126067 0.8 0.273767
Target:  5'- cGCGCGccUGgccugGACCGGCCugcGGCCGACCGa -3'
miRNA:   3'- -CGCGCa-ACa----CUGGCUGG---CUGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 159270 0.8 0.299383
Target:  5'- uCGaCGUUGUGACUGACuCGACCGACg- -3'
miRNA:   3'- cGC-GCAACACUGGCUG-GCUGGCUGgc -5'
10884 5' -57 NC_002794.1 + 122995 0.77 0.38711
Target:  5'- gGUGCGggccgUGcUGACgGGCCGGCUGGCCGu -3'
miRNA:   3'- -CGCGCa----AC-ACUGgCUGGCUGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 51213 0.77 0.403287
Target:  5'- cCGCGgaGcGGCCGGCCGGCCGAUgGg -3'
miRNA:   3'- cGCGCaaCaCUGGCUGGCUGGCUGgC- -5'
10884 5' -57 NC_002794.1 + 135530 0.74 0.535791
Target:  5'- cGCGCGccgcucgGUcGCCGACCGACCGaauaggggcgcagGCCGg -3'
miRNA:   3'- -CGCGCaa-----CAcUGGCUGGCUGGC-------------UGGC- -5'
10884 5' -57 NC_002794.1 + 18245 0.74 0.546249
Target:  5'- aGCGCGcgc-GGCCGACCGG-CGACCGc -3'
miRNA:   3'- -CGCGCaacaCUGGCUGGCUgGCUGGC- -5'
10884 5' -57 NC_002794.1 + 42053 0.74 0.546249
Target:  5'- aGCGCGUgccagaUGAUguUGGCCGACUGGCCGc -3'
miRNA:   3'- -CGCGCAac----ACUG--GCUGGCUGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 128201 0.74 0.584766
Target:  5'- cGCGaCGaUGgGACuCGACCGAUCGACCc -3'
miRNA:   3'- -CGC-GCaACaCUG-GCUGGCUGGCUGGc -5'
10884 5' -57 NC_002794.1 + 14562 0.73 0.594488
Target:  5'- cGCGCGggagGcGAgCCGGCCGACCGAagCGg -3'
miRNA:   3'- -CGCGCaa--CaCU-GGCUGGCUGGCUg-GC- -5'
10884 5' -57 NC_002794.1 + 115928 0.72 0.653121
Target:  5'- gGCGCGgcGgcgGGCCGGCCcGCCGcgugucGCCGg -3'
miRNA:   3'- -CGCGCaaCa--CUGGCUGGcUGGC------UGGC- -5'
10884 5' -57 NC_002794.1 + 48722 0.72 0.662881
Target:  5'- uGCGCGgau---CCGACCGGCCGcaauACCGg -3'
miRNA:   3'- -CGCGCaacacuGGCUGGCUGGC----UGGC- -5'
10884 5' -57 NC_002794.1 + 189868 0.72 0.672618
Target:  5'- -gGCGUcGUcGCCG-CCGACCGGCCc -3'
miRNA:   3'- cgCGCAaCAcUGGCuGGCUGGCUGGc -5'
10884 5' -57 NC_002794.1 + 140680 0.72 0.682325
Target:  5'- gGCGCaGgucgGugCGACgGACCGGCCGc -3'
miRNA:   3'- -CGCG-CaacaCugGCUGgCUGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 104879 0.72 0.691994
Target:  5'- gGCGCGUgaagcgGGCCGGCCGcgaggcGCCGugCu -3'
miRNA:   3'- -CGCGCAaca---CUGGCUGGC------UGGCugGc -5'
10884 5' -57 NC_002794.1 + 47951 0.71 0.701617
Target:  5'- cGCGCGUcccgGcGCCGGCUGGgCGACCGc -3'
miRNA:   3'- -CGCGCAaca-C-UGGCUGGCUgGCUGGC- -5'
10884 5' -57 NC_002794.1 + 123428 0.71 0.739497
Target:  5'- aGCGaCGaggcgGUGACCGucGCCGAgCGGCUGg -3'
miRNA:   3'- -CGC-GCaa---CACUGGC--UGGCUgGCUGGC- -5'
10884 5' -57 NC_002794.1 + 34757 0.7 0.757956
Target:  5'- gGCGCGgUGgGACgCGGCaCGGCCGcCCGc -3'
miRNA:   3'- -CGCGCaACaCUG-GCUG-GCUGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 149308 0.7 0.757956
Target:  5'- gGCGgGUguagGUagggcaagucgGACCgGACCGaACCGGCCGg -3'
miRNA:   3'- -CGCgCAa---CA-----------CUGG-CUGGC-UGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 122132 0.7 0.767037
Target:  5'- cGCGCGc----ACCGACCGuuucacGCCGGCCGu -3'
miRNA:   3'- -CGCGCaacacUGGCUGGC------UGGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.