miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10884 5' -57 NC_002794.1 + 192380 0.7 0.776008
Target:  5'- aGCGCGggcUGACCGccACCG-CCGcGCCGg -3'
miRNA:   3'- -CGCGCaacACUGGC--UGGCuGGC-UGGC- -5'
10884 5' -57 NC_002794.1 + 75580 0.7 0.776008
Target:  5'- cCGCGcaGUGGCUG-CCGGCCG-CCGc -3'
miRNA:   3'- cGCGCaaCACUGGCuGGCUGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 57601 0.7 0.781335
Target:  5'- cGCGCGUggccaccgagaagGcGGCCGACgaccUGGCCGACCc -3'
miRNA:   3'- -CGCGCAa------------CaCUGGCUG----GCUGGCUGGc -5'
10884 5' -57 NC_002794.1 + 76951 0.7 0.79359
Target:  5'- cCGCGgaGacGCCGuCCGGCCGGCCc -3'
miRNA:   3'- cGCGCaaCacUGGCuGGCUGGCUGGc -5'
10884 5' -57 NC_002794.1 + 71230 0.7 0.802185
Target:  5'- cCGCGUaGUGG-CGGCCGGCgugGACCGg -3'
miRNA:   3'- cGCGCAaCACUgGCUGGCUGg--CUGGC- -5'
10884 5' -57 NC_002794.1 + 90475 0.69 0.8098
Target:  5'- cGCGCGgcGgGGCCGccgucccGCgCGAUCGGCCGu -3'
miRNA:   3'- -CGCGCaaCaCUGGC-------UG-GCUGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 72746 0.69 0.810639
Target:  5'- cCGCGgc--GGCCG-CCGACCGAgCGg -3'
miRNA:   3'- cGCGCaacaCUGGCuGGCUGGCUgGC- -5'
10884 5' -57 NC_002794.1 + 90664 0.69 0.810639
Target:  5'- cGCGcCGUUGgGGCCGGCCGcgUGGCUGu -3'
miRNA:   3'- -CGC-GCAACaCUGGCUGGCugGCUGGC- -5'
10884 5' -57 NC_002794.1 + 63915 0.69 0.818945
Target:  5'- uCGCGccGcGACCG-CCGcCCGGCCGg -3'
miRNA:   3'- cGCGCaaCaCUGGCuGGCuGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 153423 0.69 0.819767
Target:  5'- cGCGCGgagccgagcugggcGUGGaCGAUCGaACCGACCGa -3'
miRNA:   3'- -CGCGCaa------------CACUgGCUGGC-UGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 153717 0.69 0.827096
Target:  5'- cCGCGacGUcACCGacGCCGAgCCGACCGg -3'
miRNA:   3'- cGCGCaaCAcUGGC--UGGCU-GGCUGGC- -5'
10884 5' -57 NC_002794.1 + 32262 0.69 0.835085
Target:  5'- gGCGCucgacGGCCGGCCGAUCGGCg- -3'
miRNA:   3'- -CGCGcaacaCUGGCUGGCUGGCUGgc -5'
10884 5' -57 NC_002794.1 + 32304 0.69 0.842906
Target:  5'- cCGCGgc--GGCCGcGCCGGCCGcgGCCGg -3'
miRNA:   3'- cGCGCaacaCUGGC-UGGCUGGC--UGGC- -5'
10884 5' -57 NC_002794.1 + 68473 0.69 0.842906
Target:  5'- gGCGCaGUggggcacggagGcGGCCGAgCCGGCCGugCGg -3'
miRNA:   3'- -CGCG-CAa----------CaCUGGCU-GGCUGGCugGC- -5'
10884 5' -57 NC_002794.1 + 61752 0.69 0.845985
Target:  5'- cGCGCGagGUGugCGaggggggguccucucGCCucCCGACCGu -3'
miRNA:   3'- -CGCGCaaCACugGC---------------UGGcuGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 131030 0.68 0.850551
Target:  5'- cGUGCGgcGcGGCCGGCUG-CCG-CCGa -3'
miRNA:   3'- -CGCGCaaCaCUGGCUGGCuGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 44398 0.68 0.850551
Target:  5'- cGCGCccGUUccggucUGACCGGCCGgcGCCGAgCGg -3'
miRNA:   3'- -CGCG--CAAc-----ACUGGCUGGC--UGGCUgGC- -5'
10884 5' -57 NC_002794.1 + 27382 0.68 0.850551
Target:  5'- aCGCacggGUcGACCGACCGgaugaccgcucgACCGGCCGc -3'
miRNA:   3'- cGCGcaa-CA-CUGGCUGGC------------UGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 195574 0.68 0.850551
Target:  5'- cCGCccc--GACCGACCGccggACCGGCCGa -3'
miRNA:   3'- cGCGcaacaCUGGCUGGC----UGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 124256 0.68 0.858015
Target:  5'- cGCGCGgguaGUcGCCGGCCaGCCG-CCGc -3'
miRNA:   3'- -CGCGCaa--CAcUGGCUGGcUGGCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.